Annotations: 8YPD

Cryo-EM structure of the LH1 complex from Allochromatium tepidum

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth b]	Fe_hyd_SSU	e8ypdb1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
AA [auth Z]	Fe_hyd_SSU	e8ypdZ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
C [auth A]	Fe_hyd_SSU	e8ypdA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
E [auth C]	Fe_hyd_SSU	e8ypdC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
G [auth E]	Fe_hyd_SSU	e8ypdE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
I [auth H]	Fe_hyd_SSU	e8ypdH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
K [auth J]	Fe_hyd_SSU	e8ypdJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
M [auth L]	Fe_hyd_SSU	e8ypdL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
O [auth N]	Fe_hyd_SSU	e8ypdN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
Q [auth P]	Fe_hyd_SSU	e8ypdP1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
S [auth R]	Fe_hyd_SSU	e8ypdR1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
U [auth T]	Fe_hyd_SSU	e8ypdT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
W [auth V]	Fe_hyd_SSU	e8ypdV1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
Y [auth X]	Fe_hyd_SSU	e8ypdX1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
B [auth F]	Fe_hyd_SSU	e8ypdF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
BA [auth a]	Fe_hyd_SSU	e8ypda1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
D [auth B]	Fe_hyd_SSU	e8ypdB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
F [auth D]	Fe_hyd_SSU	e8ypdD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
H [auth G]	Fe_hyd_SSU	e8ypdG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
J [auth I]	Fe_hyd_SSU	e8ypdI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
L [auth K]	Fe_hyd_SSU	e8ypdK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
N [auth M]	Fe_hyd_SSU	e8ypdM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
P [auth O]	Fe_hyd_SSU	e8ypdO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
R [auth Q]	Fe_hyd_SSU	e8ypdQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
T [auth S]	Fe_hyd_SSU	e8ypdS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
V [auth U]	Fe_hyd_SSU	e8ypdU1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
X [auth W]	Fe_hyd_SSU	e8ypdW1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
Z [auth Y]	Fe_hyd_SSU	e8ypdY1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W [auth V], Y [auth X]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit		Domain
B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V [auth U], X [auth W], Z [auth Y]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W [auth V], Y [auth X]	Beta subunit of light-harvesting 1 complex	-	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V [auth U], X [auth W], Z [auth Y]	LH1 alpha subunit	-	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W [auth V], Y [auth X]	IPR000066	Antenna complex, alpha/beta subunit	Domain
A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W [auth V], Y [auth X]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W [auth V], Y [auth X]	IPR035889	Light-harvesting complex	Homologous Superfamily
A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W [auth V], Y [auth X]	IPR002362	Light-harvesting protein B beta chain	Family
B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V [auth U], X [auth W], Z [auth Y]	IPR000066	Antenna complex, alpha/beta subunit	Domain
B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V [auth U], X [auth W], Z [auth Y]	IPR018332	Antenna complex, alpha subunit	Family
B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V [auth U], X [auth W], Z [auth Y]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V [auth U], X [auth W], Z [auth Y]	IPR035889	Light-harvesting complex	Homologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth b], AA [auth Z], B [auth F], BA [auth a], C [auth A] A [auth b], AA [auth Z], B [auth F], BA [auth a], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O], Q [auth P], R [auth Q], S [auth R], T [auth S], U [auth T], V [auth U], W [auth V], X [auth W], Y [auth X], Z [auth Y]	PDBTM	Annotated as membrane protein by PDBTM