Annotations: 8YPD

Cryo-EM structure of the LH1 complex from Allochromatium tepidum

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y [auth X]	e8ypdX1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
W [auth V]	e8ypdV1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
U [auth T]	e8ypdT1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
S [auth R]	e8ypdR1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
Q [auth P]	e8ypdP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
O [auth N]	e8ypdN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
M [auth L]	e8ypdL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
K [auth J]	e8ypdJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
I [auth H]	e8ypdH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
G [auth E]	e8ypdE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
E [auth C]	e8ypdC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
C [auth A]	e8ypdA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
AA [auth Z]	e8ypdZ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
A [auth b]	e8ypdb1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
Z [auth Y]	e8ypdY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
X [auth W]	e8ypdW1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
V [auth U]	e8ypdU1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
T [auth S]	e8ypdS1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
R [auth Q]	e8ypdQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
P [auth O]	e8ypdO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
N [auth M]	e8ypdM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
L [auth K]	e8ypdK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
J [auth I]	e8ypdI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
H [auth G]	e8ypdG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
F [auth D]	e8ypdD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
D [auth B]	e8ypdB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
BA [auth a]	e8ypda1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
B [auth F]	e8ypdF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W [auth V], Y [auth X]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit		Domain
B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V [auth U], X [auth W], Z [auth Y]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W [auth V], Y [auth X]	Beta subunit of light-harvesting 1 complex	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V [auth U], X [auth W], Z [auth Y]	LH1 alpha subunit	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W [auth V], Y [auth X]	IPR000066	Antenna complex, alpha/beta subunit	Domain
A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W [auth V], Y [auth X]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W [auth V], Y [auth X]	IPR035889	Light-harvesting complex	Homologous Superfamily
A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], A [auth b], AA [auth Z], C [auth A], E [auth C], G [auth E], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R], U [auth T], W [auth V], Y [auth X]	IPR002362	Light-harvesting protein B beta chain	Family
B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V [auth U], X [auth W], Z [auth Y]	IPR000066	Antenna complex, alpha/beta subunit	Domain
B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V [auth U], X [auth W], Z [auth Y]	IPR018332	Antenna complex, alpha subunit	Family
B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V [auth U], X [auth W], Z [auth Y]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], B [auth F], BA [auth a], D [auth B], F [auth D], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q], T [auth S], V [auth U], X [auth W], Z [auth Y]	IPR035889	Light-harvesting complex	Homologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth b], AA [auth Z], B [auth F], BA [auth a], C [auth A] A [auth b], AA [auth Z], B [auth F], BA [auth a], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O], Q [auth P], R [auth Q], S [auth R], T [auth S], U [auth T], V [auth U], W [auth V], X [auth W], Y [auth X], Z [auth Y]	PDBTM	Annotated as membrane protein by PDBTM