8Y80 | pdb_00008y80

Cryo-EM structure of the tetrameric SPARSA gRNA-ssDNA complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
NWD40e8y80N1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
JWD40e8y80J1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
FWD40e8y80F1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
BWD40e8y80B1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, E, I, M
PF13289SIR2-like domain (SIR2_2)SIR2-like domain- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D, H, L, P
DNA (25-mer)---
C, G, K, O
RNA (21-mer)---
B, F, J, N
Piwi domain protein - -
A, E, I, M
Sir2 superfamily protein - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, F, J, N
IPR036397Ribonuclease H superfamilyHomologous Superfamily
B, F, J, N
IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
A, E, I, M
IPR029035DHS-like NAD/FAD-binding domain superfamilyHomologous Superfamily