Annotations: 8Y41

VcFadRqm, mutant protein of Fatty Acid Responsive Transcription Factor from Vibrio cholerae, in Complex with oleoyl-CoA

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	WD40	e8y41A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B [auth D]	WD40	e8y41D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth D]	PF07840	FadR C-terminal domain (FadR_C)	FadR C-terminal domain	-	Family
A, B [auth D]	PF00392	Bacterial regulatory proteins, gntR family (GntR)	Bacterial regulatory proteins, gntR family	This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerisation domain. The GntR-like proteins include the following sub-fam ...	This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerisation domain. The GntR-like proteins include the following sub-families: MocR, YtrR, FadR, AraR, HutC and PlmA, DevA, DasR [1-2][4][5]. Many of these proteins have been shown experimentally to be autoregulatory, enabling the prediction of operator sites and the discovery of cis/trans relationships [3]. The DasR regulator has been shown to be a global regulator of primary metabolism and development in Streptomyces coelicolor [5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth D]	Fatty acid metabolism regulator protein	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding cis-regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding fatty-acyl-CoA binding acyl-CoA binding nucleoside phosphate binding ion binding anion binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding cis-regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding fatty-acyl-CoA binding acyl-CoA binding nucleoside phosphate binding ion binding anion binding lipid binding heterocyclic compound binding fatty acid derivative binding small molecule binding sulfur compound binding transcription regulator activity DNA-binding transcription factor activity	fatty acid metabolic process oxoacid metabolic process carboxylic acid metabolic process primary metabolic process metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process lipid metabolic process regulation of cellular process regulation of lipid metabolic process negative regulation of biological process lipid biosynthetic process negative regulation of lipid biosynthetic process fatty acid metabolic process oxoacid metabolic process carboxylic acid metabolic process primary metabolic process metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process lipid metabolic process regulation of cellular process regulation of lipid metabolic process negative regulation of biological process lipid biosynthetic process negative regulation of lipid biosynthetic process regulation of primary metabolic process phospholipid metabolic process negative regulation of cellular process negative regulation of phospholipid biosynthetic process phosphorus metabolic process regulation of biosynthetic process regulation of biological process negative regulation of metabolic process biological regulation regulation of phospholipid metabolic process phospholipid biosynthetic process regulation of phospholipid biosynthetic process negative regulation of phospholipid metabolic process biosynthetic process negative regulation of biosynthetic process organophosphate metabolic process organophosphate biosynthetic process negative regulation of phosphorus metabolic process regulation of phosphorus metabolic process regulation of lipid biosynthetic process regulation of metabolic process negative regulation of lipid metabolic process RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process ketone metabolic process regulation of ketone metabolic process regulation of small molecule metabolic process regulation of fatty acid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth D]	IPR028374	FadR, C-terminal domain	Domain
A, B [auth D]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B [auth D]	IPR000524	Transcription regulator HTH, GntR	Domain
A, B [auth D]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, B [auth D]	IPR014178	Fatty acid response transcription factor FadR	Family
A, B [auth D]	IPR008920	Transcription regulator FadR/GntR, C-terminal	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8Y41 | pdb_00008y41

VcFadRqm, mutant protein of Fatty Acid Responsive Transcription Factor from Vibrio cholerae, in Complex with oleoyl-CoA

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage