dormant ribosome with STM1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth LD] | SCOP2B Superfamily | Translational machinery components | 8052875 | 3000571 | SCOP2B (2022-06-29) |
| H [auth LC] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052815 | 3002143 | SCOP2B (2022-06-29) |
| H [auth LC] | SCOP2B Superfamily | Ribosomal protein L4 | 8052816 | 3001146 | SCOP2B (2022-06-29) |
| XB [auth Sc] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8063430 | 3000135 | SCOP2B (2022-06-29) |
| WB [auth SU] | SCOP2B Superfamily | Ribosomal protein S10 | 8098648 | 3001336 | SCOP2B (2022-06-29) |
| VB [auth Sd] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052569 | 3000068 | SCOP2B (2022-06-29) |
| UB [auth SQ] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8103366 | 3000100 | SCOP2B (2022-06-29) |
| SB [auth SZ] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8059235 | 3000034 | SCOP2B (2022-06-29) |
| RB [auth SP] | SCOP2B Superfamily | Ribosomal protein S19 | 8086076 | 3000686 | SCOP2B (2022-06-29) |
| OB [auth Se] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053451 | 3002190 | SCOP2B (2022-06-29) |
| MB [auth Sa] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053149 | 3000068 | SCOP2B (2022-06-29) |
| JB [auth SW] | SCOP2B Superfamily | Ribosomal protein S8 | 8096922 | 3000709 | SCOP2B (2022-06-29) |
| IB [auth SV] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053136 | 3000068 | SCOP2B (2022-06-29) |
| HB [auth SO] | SCOP2B Superfamily | Translational machinery components | 8098660 | 3000571 | SCOP2B (2022-06-29) |
| GB [auth SN] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052974 | 3001284 | SCOP2B (2022-06-29) |
| GB [auth SN] | SCOP2B Superfamily | Homeodomain-like | 8052973 | 3000001 | SCOP2B (2022-06-29) |
| FB [auth SM] | SCOP2B Superfamily | L30e-like | 8096946 | 3001739 | SCOP2B (2022-06-29) |
| EB [auth SL] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052738 | 3000135 | SCOP2B (2022-06-29) |
| EB [auth SL] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052736 | 3002138 | SCOP2B (2022-06-29) |
| DB [auth SK] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055713 | 3000034 | SCOP2B (2022-06-29) |
| BB [auth SI] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053083 | 3000433 | SCOP2B (2022-06-29) |
| ZA [auth SG] | SCOP2B Superfamily | GS N-terminal domain-like | 8053173 | 3000408 | SCOP2B (2022-06-29) |
| YA [auth SE] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052759 | 3000135 | SCOP2B (2022-06-29) |
| YA [auth SE] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052758 | 3001473 | SCOP2B (2022-06-29) |
| YA [auth SE] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052760 | 3000334 | SCOP2B (2022-06-29) |
| TA [auth Lp] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8103126 | 3001320 | SCOP2B (2022-06-29) |
| PA [auth Ll] | SCOP2B Superfamily | Ribosomal protein L39e | 8078549 | 3001756 | SCOP2B (2022-06-29) |
| OA [auth Lk] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053562 | 3002206 | SCOP2B (2022-06-29) |
| NA [auth Lj] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8080044 | 3001320 | SCOP2B (2022-06-29) |
| D [auth SB] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053211 | 3002166 | SCOP2B (2022-06-29) |
| MA [auth Li] | SCOP2B Superfamily | Ribosomal protein L36e | 8053115 | 3002161 | SCOP2B (2022-06-29) |
| KA [auth Lg] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053547 | 3002203 | SCOP2B (2022-06-29) |
| JA [auth Lf] | SCOP2B Superfamily | Translational proteins | 8087451 | 3000811 | SCOP2B (2022-06-29) |
| GA [auth Lc] | SCOP2B Superfamily | L30e-like | 8039862 | 3001739 | SCOP2B (2022-06-29) |
| FA [auth Lb] | SCOP2B Superfamily | Ribosomal protein L29e | 8053045 | 3002157 | SCOP2B (2022-06-29) |
| EA [auth La] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8077127 | 3001045 | SCOP2B (2022-06-29) |
| DA [auth LZ] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053046 | 3000334 | SCOP2B (2022-06-29) |
| C [auth LB] | SCOP2B Superfamily | Translational proteins | 8078363 | 3000811 | SCOP2B (2022-06-29) |
| CA [auth LY] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076760 | 3000334 | SCOP2B (2022-06-29) |
| BA [auth LX] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8095962 | 3000210 | SCOP2B (2022-06-29) |
| Z [auth LV] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103364 | 3000433 | SCOP2B (2022-06-29) |
| Y [auth LU] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053058 | 3002158 | SCOP2B (2022-06-29) |
| V [auth LR] | SCOP2B Superfamily | Ribosomal protein L19 (L19e) | 8077485 | 3000890 | SCOP2B (2022-06-29) |
| U [auth LQ] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095970 | 3001045 | SCOP2B (2022-06-29) |
| T [auth LP] | SCOP2B Superfamily | Ribosomal protein L22 | 8076708 | 3001078 | SCOP2B (2022-06-29) |
| B [auth SA] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8061280 | 3001397 | SCOP2B (2022-06-29) |
| S [auth LO] | SCOP2B Superfamily | Ribosomal protein L13 | 8066053 | 3001134 | SCOP2B (2022-06-29) |
| R [auth LN] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082481 | 3000210 | SCOP2B (2022-06-29) |
| P [auth LL] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8053159 | 3002162 | SCOP2B (2022-06-29) |
| O [auth LJ] | SCOP2B Superfamily | RL5-like | 8099392 | 3001709 | SCOP2B (2022-06-29) |
| N [auth LI] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8079407 | 3000884 | SCOP2B (2022-06-29) |
| L [auth LG] | SCOP2B Superfamily | L30e-like | 8063962 | 3001739 | SCOP2B (2022-06-29) |
| K [auth LF] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052917 | 3001378 | SCOP2B (2022-06-29) |
| K [auth LF] | SCOP2B Superfamily | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8052916 | 3002152 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth LD] | WD40 | e8y0uLD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| H [auth LC] | WD40 | e8y0uLC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| YB [auth s] | WD40 | e8y0us1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| XB [auth Sc] | WD40 | e8y0uSc1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| WB [auth SU] | WD40 | e8y0uSU1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| VB [auth Sd] | WD40 | e8y0uSd1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| UB [auth SQ] | WD40 | e8y0uSQ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| TB [auth ST] | WD40 | e8y0uST1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| SB [auth SZ] | WD40 | e8y0uSZ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| RB [auth SP] | WD40 | e8y0uSP1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| QB [auth Sf] | WD40 | e8y0uSf1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| PB [auth 5] | WD40 | e8y0u51 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| OB [auth Se] | WD40 | e8y0uSe1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| NB [auth Sb] | WD40 | e8y0uSb1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| MB [auth Sa] | WD40 | e8y0uSa1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| LB [auth SY] | WD40 | e8y0uSY1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| KB [auth SX] | WD40 | e8y0uSX1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| JB [auth SW] | WD40 | e8y0uSW1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| IB [auth SV] | WD40 | e8y0uSV1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| HB [auth SO] | WD40 | e8y0uSO1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| GB [auth SN] | WD40 | e8y0uSN1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| FB [auth SM] | WD40 | e8y0uSM1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| EB [auth SL] | WD40 | e8y0uSL1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| DB [auth SK] | WD40 | e8y0uSK1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| CB [auth SJ] | WD40 | e8y0uSJ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| BB [auth SI] | WD40 | e8y0uSI1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| AB [auth SH] | WD40 | e8y0uSH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| ZA [auth SG] | WD40 | e8y0uSG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| YA [auth SE] | WD40 | e8y0uSE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| XA [auth SC] | WD40 | e8y0uSC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| VA [auth P2] | WD40 | e8y0uP21 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| UA [auth P0] | WD40 | e8y0uP01 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| TA [auth Lp] | WD40 | e8y0uLp1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| SA [auth Lo] | WD40 | e8y0uLo1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| QA [auth Lm] | WD40 | e8y0uLm1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| PA [auth Ll] | WD40 | e8y0uLl1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| OA [auth Lk] | WD40 | e8y0uLk1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| NA [auth Lj] | WD40 | e8y0uLj1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| D [auth SB] | WD40 | e8y0uSB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| MA [auth Li] | WD40 | e8y0uLi1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| LA [auth Lh] | WD40 | e8y0uLh1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| KA [auth Lg] | WD40 | e8y0uLg1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| JA [auth Lf] | WD40 | e8y0uLf1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| IA [auth Le] | WD40 | e8y0uLe1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| HA [auth Ld] | WD40 | e8y0uLd1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| GA [auth Lc] | WD40 | e8y0uLc1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| FA [auth Lb] | WD40 | e8y0uLb1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| EA [auth La] | WD40 | e8y0uLa1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| DA [auth LZ] | WD40 | e8y0uLZ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| C [auth LB] | WD40 | e8y0uLB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| CA [auth LY] | WD40 | e8y0uLY1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| BA [auth LX] | WD40 | e8y0uLX1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| AA [auth LW] | WD40 | e8y0uLW1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| Z [auth LV] | WD40 | e8y0uLV1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| Y [auth LU] | WD40 | e8y0uLU1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| X [auth LT] | WD40 | e8y0uLT1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| W [auth LS] | WD40 | e8y0uLS1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| V [auth LR] | WD40 | e8y0uLR1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| U [auth LQ] | WD40 | e8y0uLQ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| T [auth LP] | WD40 | e8y0uLP1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| B [auth SA] | WD40 | e8y0uSA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| S [auth LO] | WD40 | e8y0uLO1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| R [auth LN] | WD40 | e8y0uLN1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| Q [auth LM] | WD40 | e8y0uLM1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| P [auth LL] | WD40 | e8y0uLL1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| O [auth LJ] | WD40 | e8y0uLJ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| N [auth LI] | WD40 | e8y0uLI1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| M [auth LH] | WD40 | e8y0uLH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| L [auth LG] | WD40 | e8y0uLG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| K [auth LF] | WD40 | e8y0uLF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| J [auth LE] | WD40 | e8y0uLE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| A [auth LA] | WD40 | e8y0uLA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth LD] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| I [auth LD] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
| I [auth LD] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
| H [auth LC] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
| H [auth LC] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| WB [auth SU] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| UB [auth SQ] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| TB [auth ST] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| RB [auth SP] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| PB [auth 5] | PF21485 | Translation initiation factor 5A-like, N-terminal (IF5A-like_N) | Translation initiation factor 5A-like, N-terminal | This is the N-terminal domain of Translation initiation factor 5A from eukaryotes and archaea, which has a SH2-like fold. These proteins are involved in translation elongation and eIF5A is specifically required to promote peptide-bond formation betwe ... | Domain |
| PB [auth 5] | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold (eIF-5a) | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | eIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast [1]. | Domain |
| LB [auth SY] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
| KB [auth SX] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| JB [auth SW] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| IB [auth SV] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
| HB [auth SO] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| GB [auth SN] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| FB [auth SM] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| EB [auth SL] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
| EB [auth SL] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| DB [auth SK] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
| CB [auth SJ] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| CB [auth SJ] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| BB [auth SI] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
| AB [auth SH] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
| ZA [auth SG] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
| YA [auth SE] | PF04758 | Ribosomal protein S30 (Ribosomal_S30) | Ribosomal protein S30 | - | Family |
| YA [auth SE] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| YA [auth SE] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
| YA [auth SE] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| YA [auth SE] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| YA [auth SE] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| XA [auth SC] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| XA [auth SC] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | Domain | |
| XA [auth SC] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| VA [auth P2] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| UA [auth P0] | PF17777 | Insertion domain in 60S ribosomal protein L10P (RL10P_insert) | Insertion domain in 60S ribosomal protein L10P | This domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. | Domain |
| D [auth SB] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| DA [auth LZ] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
| C [auth LB] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
| CA [auth LY] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| CA [auth LY] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| BA [auth LX] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| AA [auth LW] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | Domain | |
| Z [auth LV] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| Y [auth LU] | PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family |
| W [auth LS] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| V [auth LR] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| V [auth LR] | PF25476 | Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) | Ribosomal protein L19e, C-terminal domain | This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| U [auth LQ] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
| T [auth LP] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| T [auth LP] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
| B [auth SA] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| S [auth LO] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| S [auth LO] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| R [auth LN] | PF05162 | Ribosomal protein L41 (Ribosomal_L41) | Ribosomal protein L41 | - | Family |
| R [auth LN] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| Q [auth LM] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. | Domain |
| Q [auth LM] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
| Q [auth LM] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| P [auth LL] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
| P [auth LL] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
| O [auth LJ] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| O [auth LJ] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
| O [auth LJ] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| N [auth LI] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| N [auth LI] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
| M [auth LH] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| M [auth LH] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| L [auth LG] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| K [auth LF] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| K [auth LF] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | This entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. | Domain |
| J [auth LE] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
| J [auth LE] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
| A [auth LA] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| A [auth LA] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |














