8XZ3

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth D]SCOP2B SuperfamilyTranslational proteins 8089146 3000811 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyRibosomal protein L4 8080698 3001146 SCOP2B (2022-06-29)
G [auth F]SCOP2B SuperfamilyRL5-like 8073880 3001709 SCOP2B (2022-06-29)
L [auth K]SCOP2B SuperfamilyRibosomal protein L13 8066067 3001134 SCOP2B (2022-06-29)
M [auth L]SCOP2B Superfamily50S Ribosomal protein L14-like 8072026 3000433 SCOP2B (2022-06-29)
N [auth M]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8097982 3001045 SCOP2B (2022-06-29)
O [auth N]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8076049 3000884 SCOP2B (2022-06-29)
P [auth O]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8089012 3000995 SCOP2B (2022-06-29)
Q [auth P]SCOP2B SuperfamilyTranslational machinery components 8097978 3000571 SCOP2B (2022-06-29)
R [auth Q]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082427 3000334 SCOP2B (2022-06-29)
S [auth R]SCOP2B SuperfamilyRibosomal protein L20 8075008 3000563 SCOP2B (2022-06-29)
T [auth S]SCOP2B Superfamilyl21p-like 8082445 3002005 SCOP2B (2022-06-29)
U [auth T]SCOP2B SuperfamilyRibosomal protein L22 8081516 3001078 SCOP2B (2022-06-29)
V [auth U]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8077101 3000210 SCOP2B (2022-06-29)
W [auth V]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082509 3000334 SCOP2B (2022-06-29)
Y [auth X]SCOP2B SuperfamilyRibosomal L27 protein-like 8075032 3000539 SCOP2B (2022-06-29)
AA [auth Z]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8080678 3000713 SCOP2B (2022-06-29)
BA [auth a]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8076279 3001378 SCOP2B (2022-06-29)
DA [auth c]SCOP2B SuperfamilyZn-binding ribosomal proteins 8075054 3001320 SCOP2B (2022-06-29)
FA [auth e]SCOP2B SuperfamilyL35p-like 8083338 3000790 SCOP2B (2022-06-29)
GA [auth f]SCOP2B SuperfamilyRibosomal protein L36 8083308 3001346 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth A]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
C [auth B]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
D [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
D [auth C]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
D [auth C]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
E [auth D]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
E [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
F [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
F [auth E]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
G [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
G [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
H [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
I [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
I [auth H]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
J [auth I]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
K [auth J]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
K [auth J]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
L [auth K]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
M [auth L]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
N [auth M]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
O [auth N]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
P [auth O]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
Q [auth P]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
R [auth Q]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
S [auth R]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
T [auth S]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
U [auth T]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
V [auth U]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
W [auth V]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
W [auth V]PF00467KOW motif (KOW)KOW motif- Family
X [auth W]PF14693Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C)Ribosomal protein TL5, C-terminal domainThis family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ...This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC proteins. TL5 or CTC are not found in Eukarya or Archaea. In some Bacteria, including E. coli, this ribosomal subunit occurs as a single domain protein (named Ribosomal subunit L25), where the only domain is homologous to TL5 N-terminal domain (hence included in family Pfam:PF01386). The function of the C-terminal domain of TLC is at present unknown.
Domain
X [auth W]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
Y [auth X]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
Z [auth Y]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
AA [auth Z]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 3]50S ribosomal protein bL37- - -
B [auth A]23S rRNA---
C [auth B]5S rRNA---
D [auth C]Large ribosomal subunit protein uL2
E [auth D]Large ribosomal subunit protein uL3
F [auth E]Large ribosomal subunit protein uL4
G [auth F]Large ribosomal subunit protein uL5
H [auth G]Large ribosomal subunit protein uL6
I [auth H]50S ribosomal protein L9
J [auth I]Large ribosomal subunit protein uL10
K [auth J]Large ribosomal subunit protein uL11
L [auth K]Large ribosomal subunit protein uL13
M [auth L]50S ribosomal protein L14
N [auth M]Large ribosomal subunit protein uL15
O [auth N]Large ribosomal subunit protein uL16
P [auth O]Large ribosomal subunit protein bL17
Q [auth P]Large ribosomal subunit protein uL18
R [auth Q]50S ribosomal protein L19
S [auth R]Large ribosomal subunit protein bL20
T [auth S]Large ribosomal subunit protein bL21
U [auth T]Large ribosomal subunit protein uL22
V [auth U]Large ribosomal subunit protein uL23
W [auth V]Large ribosomal subunit protein uL24
X [auth W]Large ribosomal subunit protein bL25
Y [auth X]Large ribosomal subunit protein bL27
Z [auth Y]Large ribosomal subunit protein bL28
AA [auth Z]Large ribosomal subunit protein uL29
BA [auth a]Large ribosomal subunit protein uL30
CA [auth b]Large ribosomal subunit protein bL32
DA [auth c]Large ribosomal subunit protein bL33A
EA [auth d]Large ribosomal subunit protein bL34
FA [auth e]Large ribosomal subunit protein bL35
GA [auth f]50S ribosomal protein L36
HA [auth g]Large ribosomal subunit protein bL31

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
D [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
D [auth C]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
D [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
D [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
D [auth C]IPR002171Large ribosomal subunit protein uL2Family
E [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
E [auth D]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
E [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
E [auth D]IPR000597Large ribosomal subunit protein uL3Family
F [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
F [auth E]IPR002136Large ribosomal subunit protein uL4Family
F [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
G [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
G [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
G [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
G [auth F]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
G [auth F]IPR002132Large ribosomal subunit protein uL5Family
H [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
H [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
H [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
H [auth G]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
H [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
I [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
I [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
I [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
I [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
I [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
I [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
I [auth H]IPR000244Large ribosomal subunit protein bL9Family
J [auth I]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
J [auth I]IPR001790Large ribosomal subunit protein uL10Family
J [auth I]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
J [auth I]IPR022973Large ribosomal subunit protein uL10, bacterialFamily
J [auth I]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
K [auth J]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
K [auth J]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
K [auth J]IPR000911Ribosomal protein uL11Family
K [auth J]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
K [auth J]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
K [auth J]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
K [auth J]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
L [auth K]IPR005822Large ribosomal subunit protein uL13Family
L [auth K]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
L [auth K]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
M [auth L]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
M [auth L]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
M [auth L]IPR000218Large ribosomal subunit protein uL14Family
M [auth L]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
N [auth M]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
N [auth M]IPR021131Large ribosomal subunit protein uL15/eL18Domain
N [auth M]IPR030878Large ribosomal subunit protein uL15Family
N [auth M]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
N [auth M]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
O [auth N]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
O [auth N]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
O [auth N]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
O [auth N]IPR016180Large ribosomal subunit protein uL16 domainDomain
O [auth N]IPR047873Large ribosomal subunit protein uL16Family
P [auth O]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
P [auth O]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
P [auth O]IPR000456Large ribosomal subunit protein bL17Family
Q [auth P]IPR005484Large ribosomal subunit protein uL18Family
Q [auth P]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
R [auth Q]IPR001857Large ribosomal subunit protein bL19Family
R [auth Q]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
R [auth Q]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
R [auth Q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
S [auth R]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
S [auth R]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
S [auth R]IPR005813Large ribosomal subunit protein bL20Family
T [auth S]IPR028909Large ribosomal subunit protein bL21-likeFamily
T [auth S]IPR001787Large ribosomal subunit protein bL21Family
T [auth S]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
T [auth S]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
U [auth T]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
U [auth T]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
U [auth T]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
U [auth T]IPR001063Large ribosomal subunit protein uL22Family
U [auth T]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
V [auth U]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
V [auth U]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
V [auth U]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
V [auth U]IPR013025Large ribosomal subunit protein uL23-likeFamily
W [auth V]IPR003256Large ribosomal subunit protein uL24Family
W [auth V]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
W [auth V]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
W [auth V]IPR005824KOWDomain
W [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth V]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
X [auth W]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
X [auth W]IPR001021Ribosomal protein bL25, long-formFamily
X [auth W]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
X [auth W]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
X [auth W]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
X [auth W]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
X [auth W]IPR050070Bacterial ribosomal protein bL25Family
Y [auth X]IPR001684Large ribosomal subunit protein bL27Family
Y [auth X]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
Z [auth Y]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
Z [auth Y]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
Z [auth Y]IPR050096Bacterial ribosomal protein bL28Family
Z [auth Y]IPR026569Large ribosomal subunit protein bL28Family
Z [auth Y]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
AA [auth Z]IPR050063Universal ribosomal protein uL29Family
AA [auth Z]IPR001854Large ribosomal subunit protein uL29Family
AA [auth Z]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
AA [auth Z]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
BA [auth a]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
BA [auth a]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
BA [auth a]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
BA [auth a]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
CA [auth b]IPR002677Large ribosomal subunit protein bL32Family
CA [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth c]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
DA [auth c]IPR001705Large ribosomal subunit protein bL33Family
DA [auth c]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
EA [auth d]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
EA [auth d]IPR000271Large ribosomal subunit protein bL34Family
FA [auth e]IPR021137Large ribosomal subunit protein bL35-likeFamily
FA [auth e]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
FA [auth e]IPR001706Large ribosomal subunit protein bL35Family
FA [auth e]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
GA [auth f]IPR000473Large ribosomal subunit protein bL36Family
GA [auth f]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
HA [auth g]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
HA [auth g]IPR027491Large ribosomal subunit protein bL31 type AFamily
HA [auth g]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
HA [auth g]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily