8XVG | pdb_00008xvg

Structure of human NuA4/TIP60 complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth D]SCOP2B SuperfamilyNucleic acid-binding proteins 8039200 3000135 SCOP2B (2022-06-29)
G [auth F]SCOP2B SuperfamilyNucleic acid-binding proteins 8039200 3000135 SCOP2B (2022-06-29)
H [auth G]SCOP2B SuperfamilyHomeodomain-like 8089897 3000001 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth L]PF20175Tra1 HEAT repeat central region (Tra1_central)Tra1 HEAT repeat central region- Repeat
A [auth L]PF20206Tra1 HEAT repeat ring region (Tra1_ring)Tra1 HEAT repeat ring region- Repeat
A [auth L]PF00454Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase)Phosphatidylinositol 3- and 4-kinase- Family
A [auth L]PF02259FAT domain (FAT)FAT domain- Repeat
B [auth A],
D [auth C],
F [auth E]
PF06068TIP49 P-loop domain (TIP49)TIP49 P-loop domainThis family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ...Domain
B [auth A],
D [auth C],
F [auth E]
PF17856TIP49 AAA-lid domain (TIP49_C)TIP49 AAA-lid domainThis family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ...Domain
C [auth B],
E [auth D],
G [auth F]
PF06068TIP49 P-loop domain (TIP49)TIP49 P-loop domainThis family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ...Domain
C [auth B],
E [auth D],
G [auth F]
PF17856TIP49 AAA-lid domain (TIP49_C)TIP49 AAA-lid domainThis family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ...Domain
H [auth G]PF16282SANT/Myb-like domain of DAMP1 (SANT_DAMP1_like)SANT/Myb-like domain of DAMP1This domain, approximately 90 residues, is mainly found in DNA methyltransferase 1-associated protein 1 (DAMP1) that plays an important role in development and maintenace of genome integrity in various mammalia species [2,3]. It mainly consists of ta ...Domain
H [auth G]PF05499DNA methyltransferase 1-associated protein 1 (DMAP1) (DMAP1)DNA methyltransferase 1-associated protein 1 (DMAP1)- Family
I [auth H]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Domain
I [auth H]PF00176SNF2-related domain (SNF2-rel_dom)SNF2-related domainThis domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as w ...Domain
I [auth H]PF07529HSA domain (HSA)HSA domain- Family
J [auth I],
K [auth J]
PF00022Actin (Actin)Actin- Family
PF08265YL1 nuclear protein C-terminal domain (YL1_C)YL1 nuclear protein C-terminal domainThis domain is found in proteins of the YL1 family [1]. These proteins have been shown to be DNA-binding and may be a transcription factor [1]. This domain is found in proteins that are not YL1 proteins. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L]Isoform 2 of Transformation/transcription domain-associated protein
B [auth A],
D [auth C],
F [auth E]
RuvB-like 1
C [auth B],
E [auth D],
G [auth F]
RuvB-like 2
H [auth G]DNA methyltransferase 1-associated protein 1
I [auth H]Isoform 2 of E1A-binding protein p400
J [auth I],
K [auth J]
Actin-like protein 6A
L [auth K]ACTB protein (Fragment)
Isoform 2 of Enhancer of polycomb homolog 1
Vacuolar protein sorting-associated protein 72 homolog

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth L]IPR016024Armadillo-type foldHomologous Superfamily
A [auth L]IPR003152FATC domainDomain
A [auth L]IPR011989Armadillo-like helicalHomologous Superfamily
A [auth L]IPR046805Tra1, HEAT repeat ring regionRepeat
A [auth L]IPR000403Phosphatidylinositol 3-/4-kinase, catalytic domainDomain
A [auth L]IPR046807Tra1, HEAT repeat central regionRepeat
A [auth L]IPR050517DNA Damage Response and Repair KinaseFamily
A [auth L]IPR003151PIK-related kinase, FATDomain
A [auth L]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
A [auth L]IPR014009PIK-related kinaseDomain
B [auth A],
D [auth C],
F [auth E]
IPR010339TIP49, P-loop domainDomain
B [auth A],
D [auth C],
F [auth E]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth A],
D [auth C],
F [auth E]
IPR041048RuvB-like, AAA-lid domainDomain
B [auth A],
D [auth C],
F [auth E]
IPR042487RuvBL1/2, DNA/RNA binding domainHomologous Superfamily
B [auth A],
D [auth C],
F [auth E]
IPR003593AAA+ ATPase domainDomain
B [auth A],
D [auth C],
F [auth E]
IPR027238RuvB-likeFamily
C [auth B],
E [auth D],
G [auth F]
IPR010339TIP49, P-loop domainDomain
C [auth B],
E [auth D],
G [auth F]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth B],
E [auth D],
G [auth F]
IPR041048RuvB-like, AAA-lid domainDomain
C [auth B],
E [auth D],
G [auth F]
IPR042487RuvBL1/2, DNA/RNA binding domainHomologous Superfamily
C [auth B],
E [auth D],
G [auth F]
IPR003593AAA+ ATPase domainDomain
C [auth B],
E [auth D],
G [auth F]
IPR027238RuvB-likeFamily
H [auth G]IPR027109SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1Family
H [auth G]IPR032563DAMP1, SANT/Myb-like domainDomain
H [auth G]IPR008468DNA methyltransferase 1-associated 1Domain
I [auth H]IPR000330SNF2, N-terminalDomain
I [auth H]IPR049730SNF2/RAD5-like, C-terminal helicase domainDomain
I [auth H]IPR031575E1A-binding protein p400, N-terminalDomain
I [auth H]IPR038718SNF2-like, N-terminal domain superfamilyHomologous Superfamily
I [auth H]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
I [auth H]IPR001650Helicase, C-terminal domain-likeDomain
I [auth H]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
I [auth H]IPR001005SANT/Myb domainDomain
I [auth H]IPR014012Helicase/SANT-associated domainDomain
J [auth I],
K [auth J]
IPR004001Actin, conserved siteConserved Site
J [auth I],
K [auth J]
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
J [auth I],
K [auth J]
IPR004000Actin familyFamily
L [auth K]IPR020902Actin/actin-like conserved siteConserved Site
L [auth K]IPR004001Actin, conserved siteConserved Site
L [auth K]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
L [auth K]IPR004000Actin familyFamily
IPR024943Enhancer of polycomb proteinFamily
IPR019542Enhancer of polycomb-like, N-terminalDomain
IPR009607Enhancer of polycomb, C-terminalDomain
IPR013272Vps72/YL1, C-terminalDomain
IPR046757Vps72/YL1, N-terminalDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth L]PharosQ9Y4A5
B [auth A],
D [auth C],
F [auth E]
PharosQ9Y265
C [auth B],
E [auth D],
G [auth F]
PharosQ9Y230
H [auth G]PharosQ9NPF5
I [auth H]PharosQ96L91
J [auth I],
K [auth J]
PharosO96019
L [auth K]PharosP60709
PharosQ9H2F5
PharosQ15906