Annotations: 8XUP

Crystal structure of lipoprotein NlpI in complex with MepS

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	TPR-like	8044044	3001345	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TPR-like	8044044	3001345	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TPR-like	8044044	3001345	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TPR-like	8044044	3001345	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	WD40	e8xupE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L	WD40	e8xupL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K	WD40	e8xupK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J	WD40	e8xupJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I	WD40	e8xupI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H	WD40	e8xupH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G	WD40	e8xupG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F	WD40	e8xupF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E, F, G, H, I E, F, G, H, I, J, K, L	PF00877	NlpC/P60 family (NLPC_P60)	NlpC/P60 family	The function of this domain is unknown. It is found in several lipoproteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, G, H, I E, F, G, H, I, J, K, L	Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase	peptidase activity catalytic activity, acting on a protein muramoyltetrapeptide carboxypeptidase activity hydrolase activity exopeptidase activity catalytic activity carboxypeptidase activity cysteine-type peptidase activity endopeptidase activity	glycosaminoglycan metabolic process aminoglycan metabolic process peptidoglycan metabolic process carbohydrate derivative metabolic process metabolic process cellular process macromolecule metabolic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process primary metabolic process macromolecule biosynthetic process cellular component organization capsule organization glycosaminoglycan metabolic process aminoglycan metabolic process peptidoglycan metabolic process carbohydrate derivative metabolic process metabolic process cellular process macromolecule metabolic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process primary metabolic process macromolecule biosynthetic process cellular component organization capsule organization polysaccharide metabolic process biosynthetic process cellular component organization or biogenesis capsule polysaccharide biosynthetic process external encapsulating structure organization proteolysis protein metabolic process cell wall organization or biogenesis cell wall organization peptidoglycan turnover	cell outer membrane cellular anatomical structure external encapsulating structure extracellular region membrane cell envelope outer membrane
A, B, C, D	Lipoprotein NlpI	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity protein-macromolecule adaptor activity molecular adaptor activity	glycosaminoglycan metabolic process aminoglycan metabolic process peptidoglycan metabolic process carbohydrate derivative metabolic process metabolic process cellular process macromolecule metabolic process cell division	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, G, H, I E, F, G, H, I, J, K, L	IPR052062	Murein DD-endopeptidase/LD-carboxypeptidase	Family
E, F, G, H, I E, F, G, H, I, J, K, L	IPR000064	Endopeptidase, NLPC/P60 domain	Domain
E, F, G, H, I E, F, G, H, I, J, K, L	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B, C, D	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B, C, D	IPR050498	Photosystem I assembly protein Ycf3	Family
A, B, C, D	IPR019734	Tetratricopeptide repeat	Repeat
A, B, C, D	IPR023605	Lipoprotein NlpI	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.