8XI2

Cryo-EM structure of the Chlamydomonas C* complex


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
MPN domain-containing protein
U5 snRNA---
Elongation factor Tu, chloroplastic
D [auth E]U5-40K- -
E [auth F]U6 snRNA---
F [auth q],
G [auth r],
H [auth s],
I [auth t]
Pre-mRNA-processing factor 19
J [auth a]Small nuclear ribonucleoprotein Sm D3
K [auth g]Small nuclear ribonucleoprotein G
L [auth e]Small nuclear ribonucleoprotein E
M [auth f]Sm protein F
O [auth c]Small nuclear ribonucleoprotein Sm D1
Q [auth I]Syf1-
R [auth J]Crooked neck protein-
T [auth M]PPIase cyclophilin-type domain-containing protein
U [auth T]PLRG1-
V [auth O]Rbm22 -
W [auth N]G10 protein-
X [auth R]SKI-interacting protein SKIP SNW domain-containing protein-
Y [auth H]U2 snRNA---
Z [auth S]Peptidyl-prolyl cis-trans isomerase
AA [auth W]Prp17
BA [auth L]Cdc5L
CA [auth K]Pre-mRNA-splicing factor SPF27-
DA [auth U]CWF21 domain-containing protein- -
EA [auth V]MI domain-containing protein
FA [auth Q]Intron-binding protein aquarius -
GA [auth 5]RNA (5'-R(P*CP*CP*GP*AP*AP*CP*G)-3')---
HA [auth 3]RNA (173-mer)---
N [auth d]Small nuclear ribonucleoprotein Sm D2
P [auth b]Sm domain-containing protein
S [auth P]Cwf15/Cwc15 cell cycle control protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR043173Prp8 RNase domain IV, fingers regionHomologous Superfamily
IPR012984PROCT domainDomain
IPR012591PRO8NT domainDomain
IPR021983PRP8 domain IV coreDomain
IPR019580Pre-mRNA-processing-splicing factor 8, U6-snRNA-bindingDomain
IPR019581Pre-mRNA-processing-splicing factor 8, U5-snRNA-bindingDomain
IPR027652Pre-mRNA-processing-splicing factor 8Family
IPR037518MPN domainDomain
IPR019582RNA recognition motif, spliceosomal PrP8Domain
IPR043172Prp8 RNase domain IV, palm regionHomologous Superfamily
IPR012592PROCN domainDomain
IPR042516Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamilyHomologous Superfamily
IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
IPR031950116kDa U5 small nuclear ribonucleoprotein component, N-terminalDomain
IPR005517Translation elongation factor EFG/EF2, domain IVDomain
IPR000795Translational (tr)-type GTP-binding domainDomain
IPR000640Elongation factor EFG, domain V-likeDomain
IPR035647EF-G domain III/V-likeHomologous Superfamily
IPR035655116kDa U5 small nuclear ribonucleoprotein component, C-terminalDomain
IPR044121Snu114, GTP-binding domainDomain
IPR004161Translation elongation factor EFTu-like, domain 2Domain
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
D [auth E]IPR001680WD40 repeatRepeat
D [auth E]IPR052234U5 snRNP Complex ComponentFamily
D [auth E]IPR019775WD40 repeat, conserved siteConserved Site
D [auth E]IPR020472G-protein beta WD-40 repeatRepeat
D [auth E]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
D [auth E]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
F [auth q],
G [auth r],
H [auth s],
I [auth t]
IPR003613U-box domainDomain
F [auth q],
G [auth r],
H [auth s],
I [auth t]
IPR013915Pre-mRNA-splicing factor 19Domain
F [auth q],
G [auth r],
H [auth s],
I [auth t]
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
F [auth q],
G [auth r],
H [auth s],
I [auth t]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
F [auth q],
G [auth r],
H [auth s],
I [auth t]
IPR001680WD40 repeatRepeat
F [auth q],
G [auth r],
H [auth s],
I [auth t]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
F [auth q],
G [auth r],
H [auth s],
I [auth t]
IPR038959Pre-mRNA-processing factor 19Family
J [auth a]IPR001163Sm domain, eukaryotic/archaea-typeDomain
J [auth a]IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
J [auth a]IPR047575Sm domainDomain
J [auth a]IPR034099Small nuclear ribonucleoprotein Sm D3Family
J [auth a]IPR010920LSM domain superfamilyHomologous Superfamily
K [auth g]IPR001163Sm domain, eukaryotic/archaea-typeDomain
K [auth g]IPR047575Sm domainDomain
K [auth g]IPR044641Sm-like protein Lsm7/SmGFamily
K [auth g]IPR010920LSM domain superfamilyHomologous Superfamily
K [auth g]IPR034098Small nuclear ribonucleoprotein GFamily
L [auth e]IPR001163Sm domain, eukaryotic/archaea-typeDomain
L [auth e]IPR047575Sm domainDomain
L [auth e]IPR027078Small nuclear ribonucleoprotein EFamily
L [auth e]IPR010920LSM domain superfamilyHomologous Superfamily
M [auth f]IPR001163Sm domain, eukaryotic/archaea-typeDomain
M [auth f]IPR016487Sm-like protein Lsm6/SmFFamily
M [auth f]IPR010920LSM domain superfamilyHomologous Superfamily
M [auth f]IPR047575Sm domainDomain
M [auth f]IPR034100Small nuclear ribonucleoprotein FFamily
O [auth c]IPR001163Sm domain, eukaryotic/archaea-typeDomain
O [auth c]IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
O [auth c]IPR047575Sm domainDomain
O [auth c]IPR034102Small nuclear ribonucleoprotein D1Domain
O [auth c]IPR010920LSM domain superfamilyHomologous Superfamily
Q [auth I]IPR003107HAT (Half-A-TPR) repeatRepeat
Q [auth I]IPR045075Pre-mRNA-splicing factor Syf1-likeFamily
Q [auth I]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
R [auth J]IPR003107HAT (Half-A-TPR) repeatRepeat
R [auth J]IPR045075Pre-mRNA-splicing factor Syf1-likeFamily
R [auth J]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
T [auth M]IPR013260mRNA splicing factor SYF2Family
T [auth M]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
T [auth M]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
T [auth M]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
U [auth T]IPR045241WD repeat Prp46/PLRG1-likeFamily
U [auth T]IPR001680WD40 repeatRepeat
U [auth T]IPR019775WD40 repeat, conserved siteConserved Site
U [auth T]IPR020472G-protein beta WD-40 repeatRepeat
U [auth T]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
U [auth T]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
V [auth O]IPR039171Pre-mRNA-splicing factor Cwc2/Slt11Family
V [auth O]IPR000504RNA recognition motif domainDomain
V [auth O]IPR032297Torus domainDomain
V [auth O]IPR000571Zinc finger, CCCH-typeDomain
V [auth O]IPR036855Zinc finger, CCCH-type superfamilyHomologous Superfamily
V [auth O]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
V [auth O]IPR048995STL11/RBM22-like, N-terminal domainDomain
V [auth O]IPR035979RNA-binding domain superfamilyHomologous Superfamily
W [auth N]IPR001748Pre-mRNA-splicing factor BUD31Family
X [auth R]IPR017862SKI-interacting protein, SKIPFamily
X [auth R]IPR004015SKI-interacting protein SKIP, SNW domainDomain
Z [auth S]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
Z [auth S]IPR024936Cyclophilin-type peptidyl-prolyl cis-trans isomeraseFamily
Z [auth S]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
Z [auth S]IPR044666Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-likeFamily
Z [auth S]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
AA [auth W]IPR001680WD40 repeatRepeat
AA [auth W]IPR019775WD40 repeat, conserved siteConserved Site
AA [auth W]IPR032847Pre-mRNA-processing factor 17Family
AA [auth W]IPR020472G-protein beta WD-40 repeatRepeat
AA [auth W]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AA [auth W]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
BA [auth L]IPR047242Pre-mRNA splicing factor component CDC5L/Cef1Family
BA [auth L]IPR009057Homedomain-like superfamilyHomologous Superfamily
BA [auth L]IPR001005SANT/Myb domainDomain
BA [auth L]IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1, C-terminalDomain
BA [auth L]IPR047240Pre-mRNA splicing factor component CDC5L/Cef1, second SANT/myb-like domainDomain
BA [auth L]IPR017930Myb domainDomain
CA [auth K]IPR008409Pre-mRNA-splicing factor SPF27Family
DA [auth U]IPR051372Pre-mRNA-splicing factor CWC21Family
EA [auth V]IPR050781Pre-mRNA-splicing factor CWC22Family
EA [auth V]IPR003891Initiation factor eIF-4 gamma, MA3Domain
EA [auth V]IPR003890MIF4G-like, type 3Domain
EA [auth V]IPR016024Armadillo-type foldHomologous Superfamily
FA [auth Q]IPR048966RNA helicase aquarius, beta-barrelDomain
FA [auth Q]IPR048967RNA helicase aquarius, insertion domainDomain
FA [auth Q]IPR041677DNA2/NAM7 helicase, helicase domainDomain
FA [auth Q]IPR047187Upf1-like, C-terminal helicase domainDomain
FA [auth Q]IPR045055DNA2/NAM7-like helicaseFamily
FA [auth Q]IPR032174RNA helicase aquarius, N-terminal domainDomain
FA [auth Q]IPR041679DNA2/NAM7 helicase-like, C-terminalDomain
FA [auth Q]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
N [auth d]IPR001163Sm domain, eukaryotic/archaea-typeDomain
N [auth d]IPR047575Sm domainDomain
N [auth d]IPR027248Small nuclear ribonucleoprotein Sm D2Family
N [auth d]IPR010920LSM domain superfamilyHomologous Superfamily
P [auth b]IPR001163Sm domain, eukaryotic/archaea-typeDomain
P [auth b]IPR047575Sm domainDomain
P [auth b]IPR010920LSM domain superfamilyHomologous Superfamily
P [auth b]IPR050914Small nuclear ribonucleoprotein-associated SmB/NAA38-likeFamily
S [auth P]IPR006973Pre-mRNA-splicing factor Cwf15/Cwc15Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
E [auth F]G5J
X [auth R]SEP Parent Component: SER

RESIDAA0037

PSI-MOD :  O-phospho-L-serine MOD:00046