8W7M | pdb_00008w7m

Yeast replisome in state V

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 2]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
A [auth 2]PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
A [auth 2]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
A [auth 2]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
J [auth D]PF05916GINS complex protein helical bundle domain (Sld5)GINS complex protein helical bundle domainThis entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ...Domain
J [auth D]PF16922DNA replication complex GINS protein SLD5 C-terminus (SLD5_C)DNA replication complex GINS protein SLD5 C-terminusThe C-terminal domain of DNA replication complex GINS protein SLD5 is important in the assembly of the GINS complex, a complex which is involved in initiation of DNA replication and progression of DNA replication forks [1]. Domain
K [auth E]PF02724CDC45 (CDC45)CDC45- Family
L [auth F],
M [auth G],
N [auth H]		PF12341Minichromosome loss protein, Mcl1, middle region (Mcl1_mid)Minichromosome loss protein, Mcl1, middle region- Repeat
L [auth F],
M [auth G],
N [auth H]		PF20946DNA polymerase alpha-binding protein Ctf4, C-terminal domain (Ctf4_C)DNA polymerase alpha-binding protein Ctf4, C-terminal domainThis domain is found at the C-terminal end of DNA polymerase alpha- binding protein Ctf4 from yeast, its human orthologue AND1, and similar proteins from eukaryotes. This accessory factor for DNA replication plays a role in accurately duplicating the ...Domain
B [auth 3]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
B [auth 3]PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
B [auth 3]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
B [auth 3]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
C [auth 4]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
C [auth 4]PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
C [auth 4]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
C [auth 4]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
D [auth 5]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
D [auth 5]PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
D [auth 5]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
D [auth 5]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
E [auth 6]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
E [auth 6]PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
E [auth 6]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
E [auth 6]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
F [auth 7]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
F [auth 7]PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
F [auth 7]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
F [auth 7]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
G [auth A]PF05916GINS complex protein helical bundle domain (Sld5)GINS complex protein helical bundle domainThis entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ...Domain
H [auth B]PF05916GINS complex protein helical bundle domain (Sld5)GINS complex protein helical bundle domainThis entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ...Domain
I [auth C]PF05916GINS complex protein helical bundle domain (Sld5)GINS complex protein helical bundle domainThis entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ...Domain
I [auth C]PF22466PSF3 N-terminal domain (PSF3_N)PSF3 N-terminal domainThis entry represents the GINS/PriA/YqbF domain, which is found in the N-terminal region of the GINS complex protein. The GINS complex is crucial for the establishment of DNA replication forks and replisome progression in eukaryotes. The crystal stru ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]DNA replication licensing factor MCM2
J [auth D]DNA replication complex GINS protein SLD5-
K [auth E]Cell division control protein 45
L [auth F],
M [auth G],
N [auth H]		DNA polymerase alpha-binding protein
O [auth I]DNA (71-mer)---
P [auth N]DNA polymerase epsilon subunit B
B [auth 3]DNA replication licensing factor MCM3
C [auth 4]DNA replication licensing factor MCM4
D [auth 5]Minichromosome maintenance protein 5
E [auth 6]DNA replication licensing factor MCM6
F [auth 7]DNA replication licensing factor MCM7
G [auth A]DNA replication complex GINS protein PSF1-
H [auth B]DNA replication complex GINS protein PSF2-
I [auth C]DNA replication complex GINS protein PSF3-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 2]IPR031327Mini-chromosome maintenance proteinFamily
A [auth 2]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
A [auth 2]IPR001208MCM domainDomain
A [auth 2]IPR041562MCM, AAA-lid domainDomain
A [auth 2]IPR008045DNA replication licensing factor Mcm2Family
A [auth 2]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth 2]IPR027925MCM, N-terminal domainDomain
A [auth 2]IPR033762MCM OB domainDomain
A [auth 2]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
J [auth D]IPR008591GINS complex subunit Sld5Family
J [auth D]IPR038749GINS complex protein Sld5, alpha-helical domainDomain
J [auth D]IPR036224GINS, helical bundle-like domain superfamilyHomologous Superfamily
J [auth D]IPR021151GINS subunit, domain ADomain
J [auth D]IPR031633DNA replication complex GINS protein SLD5, C-terminalDomain
K [auth E]IPR003874CDC45Family
L [auth F],
M [auth G],
N [auth H]		IPR022100WDHD1/CFT4, second beta-propellerDomain
L [auth F],
M [auth G],
N [auth H]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
L [auth F],
M [auth G],
N [auth H]		IPR048591WDHD1/CFT4, helical bundleDomain
L [auth F],
M [auth G],
N [auth H]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
P [auth N]IPR016266DNA polymerase epsilon, subunit BFamily
P [auth N]IPR007185DNA polymerase alpha/delta/epsilon, subunit BDomain
B [auth 3]IPR031327Mini-chromosome maintenance proteinFamily
B [auth 3]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
B [auth 3]IPR003593AAA+ ATPase domainDomain
B [auth 3]IPR001208MCM domainDomain
B [auth 3]IPR041562MCM, AAA-lid domainDomain
B [auth 3]IPR054007MCM3 winged helix domainDomain
B [auth 3]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 3]IPR027925MCM, N-terminal domainDomain
B [auth 3]IPR008046DNA replication licensing factor Mcm3Family
B [auth 3]IPR033762MCM OB domainDomain
B [auth 3]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth 4]IPR031327Mini-chromosome maintenance proteinFamily
C [auth 4]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
C [auth 4]IPR001208MCM domainDomain
C [auth 4]IPR041562MCM, AAA-lid domainDomain
C [auth 4]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 4]IPR027925MCM, N-terminal domainDomain
C [auth 4]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
C [auth 4]IPR008047Mini-chromosome maintenance complex protein 4Family
C [auth 4]IPR033762MCM OB domainDomain
C [auth 4]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth 5]IPR031327Mini-chromosome maintenance proteinFamily
D [auth 5]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
D [auth 5]IPR001208MCM domainDomain
D [auth 5]IPR041562MCM, AAA-lid domainDomain
D [auth 5]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth 5]IPR054125MCM5, C-terminal domainDomain
D [auth 5]IPR027925MCM, N-terminal domainDomain
D [auth 5]IPR033762MCM OB domainDomain
D [auth 5]IPR008048DNA replication licensing factor Mcm5Family
D [auth 5]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
E [auth 6]IPR008049DNA replication licensing factor Mcm6Family
E [auth 6]IPR041024Mcm6, C-terminal winged-helix domainDomain
E [auth 6]IPR031327Mini-chromosome maintenance proteinFamily
E [auth 6]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
E [auth 6]IPR001208MCM domainDomain
E [auth 6]IPR041562MCM, AAA-lid domainDomain
E [auth 6]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth 6]IPR027925MCM, N-terminal domainDomain
E [auth 6]IPR033762MCM OB domainDomain
E [auth 6]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
F [auth 7]IPR031327Mini-chromosome maintenance proteinFamily
F [auth 7]IPR008050DNA replication licensing factor Mcm7Family
F [auth 7]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
F [auth 7]IPR003593AAA+ ATPase domainDomain
F [auth 7]IPR001208MCM domainDomain
F [auth 7]IPR041562MCM, AAA-lid domainDomain
F [auth 7]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
F [auth 7]IPR027925MCM, N-terminal domainDomain
F [auth 7]IPR033762MCM OB domainDomain
F [auth 7]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth A]IPR005339GINS complex, subunit Psf1Family
G [auth A]IPR036224GINS, helical bundle-like domain superfamilyHomologous Superfamily
G [auth A]IPR021151GINS subunit, domain ADomain
H [auth B]IPR007257DNA replication complex GINS protein Psf2Family
H [auth B]IPR021151GINS subunit, domain ADomain
H [auth B]IPR036224GINS, helical bundle-like domain superfamilyHomologous Superfamily
I [auth C]IPR055221DNA replication complex GINS protein PSF3, N-terminal domainDomain
I [auth C]IPR036224GINS, helical bundle-like domain superfamilyHomologous Superfamily
I [auth C]IPR021151GINS subunit, domain ADomain
I [auth C]IPR010492GINS complex, subunit Psf3Family
I [auth C]IPR038437GINS complex, subunit Psf3 superfamilyHomologous Superfamily