Annotations: 8W1O

Cryo-EM structure of BTV virion

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	Reovirus inner layer core protein p3	8037636	3001935	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Reovirus inner layer core protein p3	8037636	3001935	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Reovirus inner layer core protein p3	8037636	3001935	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Reovirus inner layer core protein p3	8037636	3001935	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Reovirus inner layer core protein p3	8037636	3001935	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Reovirus inner layer core protein p3	8037636	3001935	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Reovirus inner layer core protein p3	8037636	3001935	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Reovirus inner layer core protein p3	8037636	3001935	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Reovirus inner layer core protein p3	8037636	3001935	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Reovirus inner layer core protein p3	8037636	3001935	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
N	V-set	e8w1oN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
J	V-set	e8w1oJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
I	V-set	e8w1oI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
H	V-set	e8w1oH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
G	V-set	e8w1oG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
F	V-set	e8w1oF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
E	V-set	e8w1oE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
D	V-set	e8w1oD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
C	V-set	e8w1oC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
B	V-set	e8w1oB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
A	V-set	e8w1oA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
N	Outer capsid protein VP2	structural molecule activity cation binding ion binding binding metal ion binding small molecule binding	import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	viral capsid icosahedral viral capsid virion component viral inner capsid
M	RNA-2	-	-	-
L	RNA-1	-	-	-
K	RNA-directed RNA polymerase	RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA binding binding nucleic acid binding nucleoside phosphate binding nucleotide binding RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA binding binding nucleic acid binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process viral genome replication viral process viral life cycle	-
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Core protein VP3	structural molecule activity	-	virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
N	IPR001742	Outer capsid protein VP2, Orbivirus	Family
K	IPR008723	RNA-dependent RNA polymerase, orbiviral	Family
K	IPR007097	RNA-directed RNA polymerase, reovirus	Domain
K	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR016029	Inner layer core protein VP3, Reovirus	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR002614	Inner layer core protein VP3, Orbivirus	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8W1O | pdb_00008w1o

Cryo-EM structure of BTV virion

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage