C [auth L04] PF00573 Ribosomal protein L4/L1 family (Ribosomal_L4) Ribosomal protein L4/L1 family - Family F [auth L09] PF01281 Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) Ribosomal protein L9, N-terminal domain - Domain F [auth L09] PF03948 Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) Ribosomal protein L9, C-terminal domain - Domain G [auth L1] PF00687 Ribosomal protein L1p/L10e family (Ribosomal_L1) Ribosomal protein L1p/L10e family This family includes prokaryotic L1 and eukaryotic L10. Domain H [auth L10] PF00466 Ribosomal protein L10 (Ribosomal_L10) Ribosomal protein L10 - Family K [auth L14] PF00238 Ribosomal protein L14p/L23e (Ribosomal_L14) Ribosomal protein L14p/L23e - Domain L [auth L15] PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A - Family N [auth L17] PF01196 Ribosomal protein L17 (Ribosomal_L17) Ribosomal protein L17 - Family Q [auth L20] PF00453 Ribosomal protein L20 (Ribosomal_L20) Ribosomal protein L20 - Family R [auth L21] PF00829 Ribosomal prokaryotic L21 protein (Ribosomal_L21p) Ribosomal prokaryotic L21 protein - Family S [auth L22] PF00237 Ribosomal protein L22p/L17e (Ribosomal_L22) Ribosomal protein L22p/L17e This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain Z [auth L30] PF00327 Ribosomal protein L30p/L7e (Ribosomal_L30) Ribosomal protein L30p/L7e This family includes prokaryotic L30 and eukaryotic L7. Domain AA [auth L31] PF01197 Ribosomal protein L31 (Ribosomal_L31) Ribosomal protein L31 - Family CA [auth L33] PF00471 Ribosomal protein L33 (Ribosomal_L33) Ribosomal protein L33 - Family DA [auth L34] PF00468 Ribosomal protein L34 (Ribosomal_L34) Ribosomal protein L34 - Family EA [auth L35] PF01632 Ribosomal protein L35 (Ribosomal_L35p) Ribosomal protein L35 - Family FA [auth L36] PF00444 Ribosomal protein L36 (Ribosomal_L36) Ribosomal protein L36 - Domain MA [auth S03] PF07650 KH domain (KH_2) KH domain - Domain MA [auth S03] PF00189 Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) Ribosomal protein S3, C-terminal domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain OA [auth S05] PF03719 Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) Ribosomal protein S5, C-terminal domain - Domain OA [auth S05] PF00333 Ribosomal protein S5, N-terminal domain (Ribosomal_S5) Ribosomal protein S5, N-terminal domain - Domain UA [auth S11] PF00411 Ribosomal protein S11 (Ribosomal_S11) Ribosomal protein S11 - Family WA [auth S13] PF00416 Ribosomal protein S13/S18 (Ribosomal_S13) Ribosomal protein S13/S18 - Family FB [auth SMPB] PF01668 SmpB protein (SmpB) SmpB protein - Family A [auth L02] PF03947 Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) Ribosomal Proteins L2, C-terminal domain - Domain A [auth L02] PF00181 Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) Ribosomal Proteins L2, RNA binding domain - Domain M [auth L16] PF00252 Ribosomal protein L16p/L10e (Ribosomal_L16) Ribosomal protein L16p/L10e - Domain B [auth L03] PF00297 Ribosomal protein L3 (Ribosomal_L3) Ribosomal protein L3 - Family X [auth L28] PF00830 Ribosomal L28 family (Ribosomal_L28) Ribosomal L28 family - Family LA [auth S02] PF00318 Ribosomal protein S2 (Ribosomal_S2) Ribosomal protein S2 - Family D [auth L05] PF00281 Ribosomal protein L5 (Ribosomal_L5) Ribosomal protein L5 - Domain D [auth L05] PF00673 ribosomal L5P family C-terminus (Ribosomal_L5_C) ribosomal L5P family C-terminus This region is found associated with Pfam:PF00281. Domain NA [auth S04] PF00163 Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) Ribosomal protein S4/S9 N-terminal domain - Family NA [auth S04] PF01479 S4 domain (S4) S4 domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. Less Domain PA [auth S06] PF01250 Ribosomal protein S6 (Ribosomal_S6) Ribosomal protein S6 - Domain SA [auth S09] PF00380 Ribosomal protein S9/S16 (Ribosomal_S9) Ribosomal protein S9/S16 - Family VA [auth S12] PF00164 Ribosomal protein S12/S23 (Ribosom_S12_S23) Ribosomal protein S12/S23 - Family E [auth L06] PF00347 Ribosomal protein L6 (Ribosomal_L6) Ribosomal protein L6 - Domain XA [auth S14] PF00253 Ribosomal protein S14p/S29e (Ribosomal_S14) Ribosomal protein S14p/S29e - Family YA [auth S15] PF00312 Ribosomal protein S15 (Ribosomal_S15) Ribosomal protein S15 - Domain ZA [auth S16] PF00886 Ribosomal protein S16 (Ribosomal_S16) Ribosomal protein S16 - Family AB [auth S17] PF00366 Ribosomal protein S17 (Ribosomal_S17) Ribosomal protein S17 - Domain BB [auth S18] PF01084 Ribosomal protein S18 (Ribosomal_S18) Ribosomal protein S18 - Family I [auth L11] PF03946 Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) Ribosomal protein L11, N-terminal domain The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain I [auth L11] PF00298 Ribosomal protein L11, RNA binding domain (Ribosomal_L11) Ribosomal protein L11, RNA binding domain - Domain