8VNC | pdb_00008vnc

Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 320s

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth B]SCOP2B SuperfamilyHis-Me finger endonucleases 8034097 3001893 SCOP2B (2022-06-29)
E [auth A]SCOP2B SuperfamilyHis-Me finger endonucleases 8034097 3001893 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth B]WD40e8vncB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
E [auth A]WD40e8vncA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth A],
F [auth B]		Intron-encoded endonuclease I-PpoI -
B [auth c],
D [auth d]		DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3')---
A [auth C],
C [auth D]		DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3')---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth A],
F [auth B]		IPR008704Zinc-binding loop region of homing endonucleaseDomain
E [auth A],
F [auth B]		IPR044930Homing endonuclease, His-Me finger superfamilyHomologous Superfamily
E [auth A],
F [auth B]		IPR044925His-Me finger superfamilyHomologous Superfamily