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Data API
8UW1
Cryo-EM structure of DNMT3A1 UDR in complex with H2AK119Ub-nucleosome
External Resource: Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
,
E
Histone H3.2
DNA binding
binding
organic cyclic compound binding
nucleic acid binding
protein heterodimerization activity
protein binding
protein dimerization activity
structural molecule activity
structural constituent of chromatin
-
protein-containing complex
intracellular anatomical structure
protein-DNA complex
nucleosome
chromatin
chromosome
cellular anatomical entity
intracellular organelle
organelle
intracellular non-membrane-bounded organelle
non-membrane-bounded organelle
membrane-bounded organelle
nucleus
membrane-enclosed lumen
protein-containing complex
intracellular anatomical structure
protein-DNA complex
nucleosome
chromatin
chromosome
cellular anatomical entity
intracellular organelle
organelle
intracellular non-membrane-bounded organelle
non-membrane-bounded organelle
membrane-bounded organelle
nucleus
membrane-enclosed lumen
intracellular membrane-bounded organelle
intracellular organelle lumen
nucleoplasm
organelle lumen
nuclear lumen
Less
B
,
F
Histone H4
DNA binding
binding
organic cyclic compound binding
nucleic acid binding
protein heterodimerization activity
protein binding
protein dimerization activity
structural molecule activity
structural constituent of chromatin
protein-containing complex organization
protein-DNA complex assembly
protein-DNA complex organization
cellular component organization
cellular component biogenesis
cellular component assembly
chromatin organization
protein-containing complex assembly
chromatin remodeling
cellular process
cellular component organization or biogenesis
nucleosome assembly
nucleosome organization
protein-containing complex
intracellular anatomical structure
protein-DNA complex
nucleosome
chromatin
chromosome
cellular anatomical entity
intracellular organelle
organelle
intracellular non-membrane-bounded organelle
non-membrane-bounded organelle
membrane-bounded organelle
nucleus
intracellular membrane-bounded organelle
C
,
G
Histone H2A
DNA binding
binding
organic cyclic compound binding
nucleic acid binding
protein heterodimerization activity
protein binding
protein dimerization activity
structural molecule activity
structural constituent of chromatin
-
protein-containing complex
intracellular anatomical structure
protein-DNA complex
nucleosome
chromatin
chromosome
cellular anatomical entity
intracellular organelle
organelle
intracellular non-membrane-bounded organelle
non-membrane-bounded organelle
membrane-bounded organelle
nucleus
intracellular membrane-bounded organelle
D
,
H
Histone H2B 1.1
DNA binding
binding
organic cyclic compound binding
nucleic acid binding
protein heterodimerization activity
protein binding
protein dimerization activity
structural molecule activity
structural constituent of chromatin
-
protein-containing complex
intracellular anatomical structure
protein-DNA complex
nucleosome
chromatin
chromosome
cellular anatomical entity
intracellular organelle
organelle
intracellular non-membrane-bounded organelle
non-membrane-bounded organelle
membrane-bounded organelle
nucleus
intracellular membrane-bounded organelle
I [auth K]
DNA (cytosine-5)-methyltransferase 3A
RNA binding
binding
organic cyclic compound binding
lncRNA binding
nucleic acid binding
sequence-specific DNA binding
DNA binding
unmethylated CpG binding
catalytic activity, acting on a protein
transferase activity, transferring one-carbon groups
S-methyltransferase activity
protein methyltransferase activity
transferase activity
methyltransferase activity
RNA binding
binding
organic cyclic compound binding
lncRNA binding
nucleic acid binding
sequence-specific DNA binding
DNA binding
unmethylated CpG binding
catalytic activity, acting on a protein
transferase activity, transferring one-carbon groups
S-methyltransferase activity
protein methyltransferase activity
transferase activity
methyltransferase activity
protein-cysteine methyltransferase activity
catalytic activity
S-adenosylmethionine-dependent methyltransferase activity
cation binding
ion binding
metal ion binding
small molecule binding
identical protein binding
protein binding
transcription factor binding
RNA polymerase II-specific DNA-binding transcription factor binding
DNA-binding transcription factor binding
double-stranded DNA binding
RNA polymerase II transcription regulatory region sequence-specific DNA binding
cis-regulatory region sequence-specific DNA binding
sequence-specific double-stranded DNA binding
transcription cis-regulatory region binding
transcription regulatory region nucleic acid binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
protein-containing complex binding
chromatin binding
transcription corepressor activity
transcription regulator activity
transcription coregulator activity
protein-macromolecule adaptor activity
molecular adaptor activity
DNA (cytosine-5-)-methyltransferase activity
DNA-methyltransferase activity
catalytic activity, acting on DNA
catalytic activity, acting on a nucleic acid
Less
response to stimulus
response to chemical
response to xenobiotic stimulus
developmental process
spermatogenesis
sexual reproduction
reproductive process
multicellular organismal reproductive process
developmental process involved in reproduction
male gamete generation
gamete generation
response to decreased oxygen levels
cellular response to stimulus
cellular response to oxygen levels
response to stimulus
response to chemical
response to xenobiotic stimulus
developmental process
spermatogenesis
sexual reproduction
reproductive process
multicellular organismal reproductive process
developmental process involved in reproduction
male gamete generation
gamete generation
response to decreased oxygen levels
cellular response to stimulus
cellular response to oxygen levels
cellular response to hypoxia
cellular response to decreased oxygen levels
cellular response to chemical stimulus
cellular response to stress
response to hypoxia
response to stress
response to oxygen levels
response to abiotic stimulus
cellular process
methylation
metabolic process
S-adenosylmethionine metabolic process
cellular metabolic process
sulfur compound metabolic process
response to nutrient levels
response to lipid
response to nutrient
response to vitamin A
response to vitamin
response to toxic substance
response to ionizing radiation
response to radiation
cellular response to bisphenol A
cellular response to organic cyclic compound
response to oxygen-containing compound
cellular response to oxygen-containing compound
response to organic cyclic compound
response to bisphenol A
cellular response to acid chemical
cellular response to amino acid stimulus
response to acid chemical
response to amino acid
response to alcohol
cellular response to alcohol
cellular response to ethanol
response to ethanol
regulation of cellular process
cellular biosynthetic process
negative regulation of biological process
RNA metabolic process
negative regulation of cellular metabolic process
regulation of primary metabolic process
negative regulation of RNA biosynthetic process
RNA biosynthetic process
nucleobase-containing compound metabolic process
DNA-templated transcription
nucleic acid biosynthetic process
regulation of RNA metabolic process
transcription by RNA polymerase II
negative regulation of cellular process
negative regulation of nucleobase-containing compound metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
negative regulation of macromolecule metabolic process
regulation of biosynthetic process
regulation of transcription by RNA polymerase II
negative regulation of DNA-templated transcription
regulation of biological process
negative regulation of transcription by RNA polymerase II
negative regulation of metabolic process
biological regulation
primary metabolic process
regulation of cellular metabolic process
regulation of macromolecule metabolic process
nucleobase-containing compound biosynthetic process
gene expression
macromolecule biosynthetic process
nucleic acid metabolic process
negative regulation of cellular biosynthetic process
regulation of cellular biosynthetic process
regulation of gene expression
biosynthetic process
negative regulation of biosynthetic process
negative regulation of macromolecule biosynthetic process
regulation of macromolecule biosynthetic process
macromolecule metabolic process
regulation of DNA-templated transcription
regulation of metabolic process
negative regulation of RNA metabolic process
negative regulation of gene expression via chromosomal CpG island methylation
protein-DNA complex organization
cellular component organization
chromatin organization
chromatin remodeling
cellular component organization or biogenesis
protein-containing complex organization
epigenetic regulation of gene expression
negative regulation of gene expression
negative regulation of gene expression, epigenetic
regulation of cellular response to hypoxia
positive regulation of biological process
regulation of cellular response to stress
positive regulation of response to stimulus
regulation of response to stress
positive regulation of cellular response to hypoxia
positive regulation of cellular process
regulation of response to stimulus
multicellular organismal process
cellular developmental process
nervous system development
generation of neurons
neurogenesis
multicellular organism development
neuron differentiation
cell differentiation
anatomical structure development
system development
DNA methylation-dependent heterochromatin formation
heterochromatin formation
facultative heterochromatin formation
response to metal ion
response to lead ion
cell development
cellular process involved in reproduction in multicellular organism
epigenetic programming of gene expression
genomic imprinting
autosome genomic imprinting
germ cell development
hepatocyte apoptotic process
apoptotic process
cell death
programmed cell death
epithelial cell apoptotic process
regulatory ncRNA-mediated gene silencing
regulatory ncRNA-mediated heterochromatin formation
response to organonitrogen compound
response to nitrogen compound
response to cocaine
response to alkaloid
response to estradiol
Less
intracellular organelle
XY body
intracellular anatomical structure
sex chromosome
organelle
intracellular non-membrane-bounded organelle
chromosome
cellular anatomical entity
non-membrane-bounded organelle
cytoplasm
protein-containing complex
protein-DNA complex
chromatin
heterochromatin
intracellular organelle
XY body
intracellular anatomical structure
sex chromosome
organelle
intracellular non-membrane-bounded organelle
chromosome
cellular anatomical entity
non-membrane-bounded organelle
cytoplasm
protein-containing complex
protein-DNA complex
chromatin
heterochromatin
membrane-bounded organelle
nucleus
membrane-enclosed lumen
intracellular membrane-bounded organelle
intracellular organelle lumen
organelle lumen
nuclear periphery
nuclear lumen
nuclear matrix
chromosome, centromeric region
chromosomal region
catalytic complex
nucleoplasm
euchromatin
Less
J [auth I]
DNA (146-MER)
-
-
-
K [auth J]
DNA (146-MER)
-
-
-
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
,
E
IPR009072
Histone-fold
Homologous Superfamily
A
,
E
IPR007125
Histone H2A/H2B/H3
Domain
A
,
E
IPR000164
Histone H3/CENP-A
Family
B
,
F
IPR009072
Histone-fold
Homologous Superfamily
B
,
F
IPR001951
Histone H4
Family
B
,
F
IPR035425
CENP-T/Histone H4, histone fold
Domain
B
,
F
IPR019809
Histone H4, conserved site
Conserved Site
B
,
F
IPR004823
TATA box binding protein associated factor (TAF), histone-like fold domain
Domain
C
,
G
IPR009072
Histone-fold
Homologous Superfamily
C
,
G
IPR007125
Histone H2A/H2B/H3
Domain
C
,
G
IPR002119
Histone H2A
Family
C
,
G
IPR032454
Histone H2A, C-terminal domain
Domain
C
,
G
IPR032458
Histone H2A conserved site
Conserved Site
D
,
H
IPR009072
Histone-fold
Homologous Superfamily
D
,
H
IPR007125
Histone H2A/H2B/H3
Domain
D
,
H
IPR000558
Histone H2B
Family
I [auth K]
IPR040552
DNMT3, cysteine rich ADD domain, GATA1-like zinc finger
Domain
I [auth K]
IPR044108
DNA (cytosine-5)-methyltransferase 3A, ADD domain
Domain
I [auth K]
IPR000313
PWWP domain
Domain
I [auth K]
IPR018117
DNA methylase, C-5 cytosine-specific, active site
Active Site
I [auth K]
IPR049554
DNMT3, ADD domain, PHD zinc finger
Domain
I [auth K]
IPR001525
C-5 cytosine methyltransferase
Family
I [auth K]
IPR025766
ADD domain
Domain
I [auth K]
IPR029063
S-adenosyl-L-methionine-dependent methyltransferase superfamily
Homologous Superfamily
Pharos: Disease Associations
Pharos Homepage Annotation
Chains
Drug Target  
Associated Disease
I [auth K]
Pharos
: 
Q9Y6K1
tall stature-intellectual disability-facial dysmorphism syndrome
Crohn disease
acute monocytic leukemia
juvenile myelomonocytic leukemia
acute myeloid leukemia
intellectual disability
breast cancer
chronic myelomonocytic leukemia
primary cutaneous T-cell non-Hodgkin lymphoma
acute promyelocytic leukemia
breast carcinoma
Clear-cell metastatic renal cell carcinoma
mature T-cell and NK-cell non-Hodgkin lymphoma
Sezary syndrome
angioimmunoblastic T-cell lymphoma
tall stature-intellectual disability-facial dysmorphism syndrome
Crohn disease
acute monocytic leukemia
juvenile myelomonocytic leukemia
acute myeloid leukemia
intellectual disability
breast cancer
chronic myelomonocytic leukemia
primary cutaneous T-cell non-Hodgkin lymphoma
acute promyelocytic leukemia
breast carcinoma
Clear-cell metastatic renal cell carcinoma
mature T-cell and NK-cell non-Hodgkin lymphoma
Sezary syndrome
angioimmunoblastic T-cell lymphoma
microcephaly
ductal breast carcinoma in situ
non-small cell lung carcinoma
pancreatic intraductal papillary-mucinous neoplasm
genetic endocrine growth disease
primary biliary cholangitis
ileocolitis
systemic mastocytosis
atypical teratoid rhabdoid tumor
lung cancer
malignant ependymoma
congenital anemia
Crohn's colitis
myelodysplastic syndrome
oligodendroglioma
glioblastoma
hematologic disease
large cell medulloblastoma
autism spectrum disorder
malignant glioma
osteosarcoma
plasma cell myeloma
granulomatous slack skin disease
primitive neuroectodermal tumor
hypertensive disorder
invasive ductal breast carcinoma
lung benign neoplasm
cancer
malignant mesothelioma
medulloblastoma
Less
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