Annotations: 8UUA

Cryo-EM structure of the Listeria innocua 50S ribosomal subunit in complex with HflXr (structure III)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth L]	V-set	e8uuaL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
H [auth G]	V-set	e8uuaG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
G [auth F]	V-set	e8uuaF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
F [auth E]	V-set	e8uuaE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
E [auth D]	V-set	e8uuaD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
D [auth C]	V-set	e8uuaC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
DA [auth 8]	V-set	e8uua81	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
CA [auth 7]	V-set	e8uua71	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
BA [auth 6]	V-set	e8uua61	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
AA [auth 5]	V-set	e8uua51	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
Z [auth 4]	V-set	e8uua41	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
Y [auth 3]	V-set	e8uua31	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
X [auth 2]	V-set	e8uua21	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
W [auth 1]	V-set	e8uua11	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
V [auth Z]	V-set	e8uuaZ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
U [auth Y]	V-set	e8uuaY1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
T [auth W]	V-set	e8uuaW1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
S [auth V]	V-set	e8uuaV1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
R [auth U]	V-set	e8uuaU1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
Q [auth T]	V-set	e8uuaT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
P [auth S]	V-set	e8uuaS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
O [auth R]	V-set	e8uuaR1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
N [auth Q]	V-set	e8uuaQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
M [auth P]	V-set	e8uuaP1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
L [auth O]	V-set	e8uuaO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
K [auth N]	V-set	e8uuaN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
J [auth M]	V-set	e8uuaM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
A [auth v]	V-set	e8uuav1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
S [auth V]	PF13167	GTP-binding GTPase N-terminal (GTP-bdg_N)	GTP-binding GTPase N-terminal	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth L]	Large ribosomal subunit protein uL13	RNA binding binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
H [auth G]	Large ribosomal subunit protein uL6	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
G [auth F]	Large ribosomal subunit protein uL5	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
F [auth E]	Large ribosomal subunit protein uL4	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
E [auth D]	Large ribosomal subunit protein uL3	structural molecule activity structural constituent of ribosome cation binding ion binding binding metal ion binding small molecule binding RNA binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
D [auth C]	Large ribosomal subunit protein uL2	RNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome cation binding ion binding metal ion binding small molecule binding transferase activity catalytic activity	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit
DA [auth 8]	Large ribosomal subunit protein bL36	structural molecule activity structural constituent of ribosome cation binding ion binding binding metal ion binding small molecule binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
C [auth B]	5S Ribosomal RNA	-	-	-
CA [auth 7]	Large ribosomal subunit protein bL35	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
BA [auth 6]	Large ribosomal subunit protein bL34	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
AA [auth 5]	Large ribosomal subunit protein bL33	structural molecule activity structural constituent of ribosome cation binding ion binding binding metal ion binding small molecule binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
Z [auth 4]	Large ribosomal subunit protein bL32	structural molecule activity structural constituent of ribosome cation binding ion binding binding metal ion binding small molecule binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit
Y [auth 3]	Large ribosomal subunit protein bL31B	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
X [auth 2]	Large ribosomal subunit protein uL30	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
W [auth 1]	Large ribosomal subunit protein uL29	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
V [auth Z]	Large ribosomal subunit protein bL28	structural molecule activity structural constituent of ribosome cation binding ion binding binding metal ion binding small molecule binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
U [auth Y]	Large ribosomal subunit protein bL27	structural molecule activity structural constituent of ribosome cation binding ion binding binding metal ion binding small molecule binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
T [auth W]	Large ribosomal subunit protein uL24	RNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome cation binding ion binding metal ion binding small molecule binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
B [auth A]	23S Ribosomal RNA	-	-	-
S [auth V]	Large ribosomal subunit protein uL23	structural molecule activity structural constituent of ribosome cation binding ion binding binding metal ion binding small molecule binding RNA binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
R [auth U]	Large ribosomal subunit protein uL22	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
Q [auth T]	Large ribosomal subunit protein bL21	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
P [auth S]	Large ribosomal subunit protein bL20	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
O [auth R]	Large ribosomal subunit protein bL19	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
N [auth Q]	Large ribosomal subunit protein uL18	RNA binding binding rRNA binding 5S rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
M [auth P]	Large ribosomal subunit protein bL17	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
L [auth O]	Large ribosomal subunit protein uL16	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
K [auth N]	Large ribosomal subunit protein uL15	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
J [auth M]	Large ribosomal subunit protein uL14	structural molecule activity structural constituent of ribosome cation binding ion binding binding metal ion binding small molecule binding RNA binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
A [auth v]	GTPase HflX	binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ribonucleoprotein complex binding protein-containing complex binding ribosome binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth L]	IPR023563	Large ribosomal subunit protein uL13, conserved site	Conserved Site
I [auth L]	IPR005822	Large ribosomal subunit protein uL13	Family
I [auth L]	IPR005823	Large ribosomal subunit protein uL13, bacteria	Family
I [auth L]	IPR036899	Large ribosomal subunit protein uL13 superfamily	Homologous Superfamily
H [auth G]	IPR020040	Large ribosomal subunit protein uL6, alpha-beta domain	Domain
H [auth G]	IPR036789	Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily	Homologous Superfamily
H [auth G]	IPR000702	Large ribosomal subunit protein uL6-like	Family
H [auth G]	IPR019906	Large ribosomal subunit protein uL6, bacteria	Family
H [auth G]	IPR002358	Large ribosomal subunit protein uL6, conserved site	Conserved Site
G [auth F]	IPR020929	Large ribosomal subunit protein uL5, conserved site	Conserved Site
G [auth F]	IPR022803	Large ribosomal subunit protein uL5 domain superfamily	Homologous Superfamily
G [auth F]	IPR031309	Large ribosomal subunit protein uL5, C-terminal	Domain
G [auth F]	IPR031310	Large ribosomal subunit protein uL5, N-terminal	Domain
G [auth F]	IPR002132	Large ribosomal subunit protein uL5	Family
G [auth F]	IPR020930	Large ribosomal subunit protein uL5, bacteria	Family
F [auth E]	IPR013005	Large ribosomal subunit protein uL4-like	Family
F [auth E]	IPR002136	Large ribosomal subunit protein uL4	Family
F [auth E]	IPR023574	Large ribosomal subunit protein uL4 domain superfamily	Homologous Superfamily
E [auth D]	IPR019926	Large ribosomal subunit protein uL3, conserved site	Conserved Site
E [auth D]	IPR019927	Large ribosomal subunit protein uL3, bacteria/organella	Family
E [auth D]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
E [auth D]	IPR000597	Large ribosomal subunit protein uL3	Family
D [auth C]	IPR005880	Large ribosomal subunit protein uL2, bacteria/organella	Family
D [auth C]	IPR022669	Large ribosomal subunit protein uL2, C-terminal	Domain
D [auth C]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
D [auth C]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
D [auth C]	IPR022671	Large ribosomal subunit protein uL2, conserved site	Conserved Site
D [auth C]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
D [auth C]	IPR022666	Large ribosomal subunit protein uL2, RNA-binding domain	Domain
D [auth C]	IPR014726	Large ribosomal subunit protein uL2, domain 3	Homologous Superfamily
D [auth C]	IPR002171	Large ribosomal subunit protein uL2	Family
DA [auth 8]	IPR000473	Large ribosomal subunit protein bL36	Family
DA [auth 8]	IPR035977	Large ribosomal subunit protein bL36 superfamily	Homologous Superfamily
CA [auth 7]	IPR021137	Large ribosomal subunit protein bL35-like	Family
CA [auth 7]	IPR018265	Large ribosomal subunit protein bL35, conserved site	Conserved Site
CA [auth 7]	IPR001706	Large ribosomal subunit protein bL35	Family
CA [auth 7]	IPR037229	Large ribosomal subunit protein bL35 superfamily	Homologous Superfamily
BA [auth 6]	IPR020939	Large ribosomal subunit protein bL34, conserved site	Conserved Site
BA [auth 6]	IPR000271	Large ribosomal subunit protein bL34	Family
AA [auth 5]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
AA [auth 5]	IPR038584	Large ribosomal subunit protein bL33 superfamily	Homologous Superfamily
AA [auth 5]	IPR001705	Large ribosomal subunit protein bL33	Family
AA [auth 5]	IPR018264	Large ribosomal subunit protein bL33, conserved site	Conserved Site
Z [auth 4]	IPR002677	Large ribosomal subunit protein bL32	Family
Z [auth 4]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
Z [auth 4]	IPR044957	Large ribosomal subunit protein bL32, bacteria	Family
Y [auth 3]	IPR002150	Large ribosomal subunit protein bL31 type A/B	Family
Y [auth 3]	IPR042105	Large ribosomal subunit protein bL31 superfamily	Homologous Superfamily
Y [auth 3]	IPR027493	Large ribosomal subunit protein bL31 type B	Family
Y [auth 3]	IPR034704	Large ribosomal subunit protein bL28/bL31-like superfamily	Homologous Superfamily
X [auth 2]	IPR036919	Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily	Homologous Superfamily
X [auth 2]	IPR005996	Large ribosomal subunit protein uL30, bacteria	Family
X [auth 2]	IPR016082	Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain	Domain
X [auth 2]	IPR018038	Large ribosomal subunit protein uL30, conserved site	Conserved Site
W [auth 1]	IPR050063	Universal ribosomal protein uL29	Family
W [auth 1]	IPR001854	Large ribosomal subunit protein uL29	Family
W [auth 1]	IPR036049	Large ribosomal subunit protein uL29 superfamily	Homologous Superfamily
W [auth 1]	IPR018254	Large ribosomal subunit protein uL29, conserved site	Conserved Site
V [auth Z]	IPR037147	Large ribosomal subunit protein bL28 superfamily	Homologous Superfamily
V [auth Z]	IPR050096	Bacterial ribosomal protein bL28	Family
V [auth Z]	IPR001383	Large ribosomal subunit protein bL28, bacteria	Family
V [auth Z]	IPR026569	Large ribosomal subunit protein bL28	Family
V [auth Z]	IPR034704	Large ribosomal subunit protein bL28/bL31-like superfamily	Homologous Superfamily
U [auth Y]	IPR001684	Large ribosomal subunit protein bL27	Family
U [auth Y]	IPR018261	Large ribosomal subunit protein bL27, conserved site	Conserved Site
T [auth W]	IPR057264	Large ribosomal subunit protein uL24, C-terminal domain	Domain
T [auth W]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
T [auth W]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
T [auth W]	IPR003256	Large ribosomal subunit protein uL24	Family
T [auth W]	IPR041988	Large ribosomal subunit protein uL24, KOW domain	Domain
T [auth W]	IPR005824	KOW	Domain
T [auth W]	IPR005825	Large ribosomal subunit protein uL24, conserved site	Conserved Site
S [auth V]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
S [auth V]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
S [auth V]	IPR013025	Large ribosomal subunit protein uL23-like	Family
R [auth U]	IPR018260	Large ribosomal subunit protein uL22, conserved site	Conserved Site
R [auth U]	IPR036394	Ribosomal protein uL22 superfamily	Homologous Superfamily
R [auth U]	IPR001063	Large ribosomal subunit protein uL22	Family
R [auth U]	IPR005727	Large ribosomal subunit protein uL22, bacterial/chloroplast-type	Family
R [auth U]	IPR047867	Large ribosomal subunit protein uL22, bacteria/organella	Family
Q [auth T]	IPR028909	Large ribosomal subunit protein bL21-like	Family
Q [auth T]	IPR001787	Large ribosomal subunit protein bL21	Family
Q [auth T]	IPR036164	Large ribosomal subunit protein bL21-like superfamily	Homologous Superfamily
Q [auth T]	IPR018258	Large ribosomal subunit protein bL21, conserved site	Conserved Site
P [auth S]	IPR049946	Large ribosomal subunit protein bL20, conserved site	Conserved Site
P [auth S]	IPR035566	Ribosomal protein bL20, C-terminal	Homologous Superfamily
P [auth S]	IPR005813	Large ribosomal subunit protein bL20	Family
O [auth R]	IPR001857	Large ribosomal subunit protein bL19	Family
O [auth R]	IPR038657	Large ribosomal subunit protein bL19 superfamily	Homologous Superfamily
O [auth R]	IPR018257	Large ribosomal subunit protein bL19, conserved site	Conserved Site
O [auth R]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
N [auth Q]	IPR005484	Large ribosomal subunit protein uL18, bacterial/plantae/animalia	Family
N [auth Q]	IPR057268	Large ribosomal subunit protein uL18	Family
N [auth Q]	IPR004389	Large ribosomal subunit protein uL18, bacteria	Family
M [auth P]	IPR036373	Large ribosomal subunit protein bL17 superfamily	Homologous Superfamily
M [auth P]	IPR047859	Large ribosomal subunit protein bL17, conserved site	Conserved Site
M [auth P]	IPR000456	Large ribosomal subunit protein bL17	Family
L [auth O]	IPR000114	Large ribosomal subunit protein uL16, bacteria	Family
L [auth O]	IPR036920	Large ribosomal subunit protein uL16 superfamily	Homologous Superfamily
L [auth O]	IPR020798	Large ribosomal subunit protein uL16, conserved site	Conserved Site
L [auth O]	IPR016180	Large ribosomal subunit protein uL16 domain	Domain
L [auth O]	IPR047873	Large ribosomal subunit protein uL16	Family
K [auth N]	IPR021131	Large ribosomal subunit protein uL15/eL18	Domain
K [auth N]	IPR030878	Large ribosomal subunit protein uL15	Family
K [auth N]	IPR001196	Large ribosomal subunit protein uL15, conserved site	Conserved Site
K [auth N]	IPR036227	Large ribosomal subunit protein uL15/eL18 superfamily	Homologous Superfamily
K [auth N]	IPR005749	Large ribosomal subunit protein uL15, bacteria	Family
J [auth M]	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
J [auth M]	IPR000218	Large ribosomal subunit protein uL14	Family
J [auth M]	IPR019972	Large ribosomal subunit protein uL14, conserved site	Conserved Site
J [auth M]	IPR005745	Large ribosomal subunit protein uL14, bacteria	Family
A [auth v]	IPR032305	GTP-binding protein, middle domain	Domain
A [auth v]	IPR016496	GTPase HflX	Family
A [auth v]	IPR030394	HflX-type guanine nucleotide-binding (G) domain	Domain
A [auth v]	IPR025121	GTPase HflX, N-terminal	Domain
A [auth v]	IPR042108	GTPase HflX, N-terminal domain superfamily	Homologous Superfamily
A [auth v]	IPR006073	GTP binding domain	Domain
A [auth v]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8UUA | pdb_00008uua

Cryo-EM structure of the Listeria innocua 50S ribosomal subunit in complex with HflXr (structure III)

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage