8UUA

Cryo-EM structure of the Listeria innocua 50S ribosomal subunit in complex with HflXr (structure III)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
J [auth M]	PF00238	Ribosomal protein L14p/L23e (Ribosomal_L14)	Ribosomal protein L14p/L23e	-	Domain
K [auth N]	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	-	Family
L [auth O]	PF00252	Ribosomal protein L16p/L10e (Ribosomal_L16)	Ribosomal protein L16p/L10e	-	Domain
M [auth P]	PF01196	Ribosomal protein L17 (Ribosomal_L17)	Ribosomal protein L17	-	Family
N [auth Q]	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast	-	Family
O [auth R]	PF01245	Ribosomal protein L19 (Ribosomal_L19)	Ribosomal protein L19	-	Family
P [auth S]	PF00453	Ribosomal protein L20 (Ribosomal_L20)	Ribosomal protein L20	-	Family
Q [auth T]	PF00829	Ribosomal prokaryotic L21 protein (Ribosomal_L21p)	Ribosomal prokaryotic L21 protein	-	Family
R [auth U]	PF00237	Ribosomal protein L22p/L17e (Ribosomal_L22)	Ribosomal protein L22p/L17e	This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.	Domain
S [auth V]	PF13167	GTP-binding GTPase N-terminal (GTP-bdg_N)	GTP-binding GTPase N-terminal	-	Family
S [auth V]	PF00276	Ribosomal protein L23 (Ribosomal_L23)	Ribosomal protein L23	-	Family
T [auth W]	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)	Ribosomal proteins 50S L24/mitochondrial 39S L24	-	Family
T [auth W]	PF00467	KOW motif (KOW)	KOW motif	-	Family
V [auth Z]	PF00830	Ribosomal L28 family (Ribosomal_L28)	Ribosomal L28 family	-	Family
W [auth 1]	PF00831	Ribosomal L29 protein (Ribosomal_L29)	Ribosomal L29 protein	-	Family
X [auth 2]	PF00327	Ribosomal protein L30p/L7e (Ribosomal_L30)	Ribosomal protein L30p/L7e	This family includes prokaryotic L30 and eukaryotic L7.	Domain
Y [auth 3]	PF01197	Ribosomal protein L31 (Ribosomal_L31)	Ribosomal protein L31	-	Family
Z [auth 4]	PF01783	Ribosomal L32p protein family (Ribosomal_L32p)	Ribosomal L32p protein family	-	Family
AA [auth 5]	PF00471	Ribosomal protein L33 (Ribosomal_L33)	Ribosomal protein L33	-	Family
BA [auth 6]	PF00468	Ribosomal protein L34 (Ribosomal_L34)	Ribosomal protein L34	-	Family
CA [auth 7]	PF01632	Ribosomal protein L35 (Ribosomal_L35p)	Ribosomal protein L35	-	Family
DA [auth 8]	PF00444	Ribosomal protein L36 (Ribosomal_L36)	Ribosomal protein L36	-	Domain
D [auth C]	PF03947	Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)	Ribosomal Proteins L2, C-terminal domain	-	Domain
D [auth C]	PF00181	Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)	Ribosomal Proteins L2, RNA binding domain	-	Domain
E [auth D]	PF00297	Ribosomal protein L3 (Ribosomal_L3)	Ribosomal protein L3	-	Family
F [auth E]	PF00573	Ribosomal protein L4/L1 family (Ribosomal_L4)	Ribosomal protein L4/L1 family	-	Family
G [auth F]	PF00281	Ribosomal protein L5 (Ribosomal_L5)	Ribosomal protein L5	-	Domain
G [auth F]	PF00673	ribosomal L5P family C-terminus (Ribosomal_L5_C)	ribosomal L5P family C-terminus	This region is found associated with Pfam:PF00281.	Domain
H [auth G]	PF00347	Ribosomal protein L6 (Ribosomal_L6)	Ribosomal protein L6	-	Domain
I [auth L]	PF00572	Ribosomal protein L13 (Ribosomal_L13)	Ribosomal protein L13	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth v]	GTPase HflX	binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding organic cyclic compound binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding organic cyclic compound binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ribonucleoprotein complex binding protein-containing complex binding ribosome binding	-	intracellular anatomical structure cytoplasm cellular anatomical entity
J [auth M]	Large ribosomal subunit protein uL14	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
K [auth N]	Large ribosomal subunit protein uL15	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome large ribosomal subunit non-membrane-bounded organelle
L [auth O]	Large ribosomal subunit protein uL16	RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
M [auth P]	Large ribosomal subunit protein bL17	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
N [auth Q]	Large ribosomal subunit protein uL18	RNA binding binding organic cyclic compound binding rRNA binding 5S rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
O [auth R]	Large ribosomal subunit protein bL19	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
P [auth S]	Large ribosomal subunit protein bL20	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
Q [auth T]	Large ribosomal subunit protein bL21	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular anatomical structure cytoplasm cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
R [auth U]	Large ribosomal subunit protein uL22	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
S [auth V]	Large ribosomal subunit protein uL23	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
B [auth A]	23S Ribosomal RNA	-	-	-
T [auth W]	Large ribosomal subunit protein uL24	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
U [auth Y]	Large ribosomal subunit protein bL27	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
V [auth Z]	Large ribosomal subunit protein bL28	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
W [auth 1]	Large ribosomal subunit protein uL29	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
X [auth 2]	Large ribosomal subunit protein uL30	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
Y [auth 3]	Large ribosomal subunit protein bL31B	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
Z [auth 4]	Large ribosomal subunit protein bL32	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome large ribosomal subunit non-membrane-bounded organelle
AA [auth 5]	Large ribosomal subunit protein bL33	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular anatomical structure cytoplasm cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
BA [auth 6]	Large ribosomal subunit protein bL34	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
CA [auth 7]	Large ribosomal subunit protein bL35	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
C [auth B]	5S Ribosomal RNA	-	-	-
DA [auth 8]	Large ribosomal subunit protein bL36	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular anatomical structure cytoplasm cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
D [auth C]	Large ribosomal subunit protein uL2	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome transferase activity catalytic activity	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
E [auth D]	Large ribosomal subunit protein uL3	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
F [auth E]	Large ribosomal subunit protein uL4	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
G [auth F]	Large ribosomal subunit protein uL5	RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
H [auth G]	Large ribosomal subunit protein uL6	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
I [auth L]	Large ribosomal subunit protein uL13	RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	regulation of cellular process cellular biosynthetic process organonitrogen compound biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process cellular biosynthetic process organonitrogen compound biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process organonitrogen compound metabolic process cellular metabolic process regulation of protein metabolic process negative regulation of metabolic process biological regulation regulation of cellular metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth v]	IPR032305	GTP-binding protein, middle domain	Domain
A [auth v]	IPR016496	GTPase HflX	Family
A [auth v]	IPR030394	HflX-type guanine nucleotide-binding (G) domain	Domain
A [auth v]	IPR025121	GTPase HflX, N-terminal	Domain
A [auth v]	IPR042108	GTPase HflX, N-terminal domain superfamily	Homologous Superfamily
A [auth v]	IPR006073	GTP binding domain	Domain
A [auth v]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
J [auth M]	IPR005745	Large ribosomal subunit protein uL14, bacterial-type	Family
J [auth M]	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
J [auth M]	IPR000218	Large ribosomal subunit protein uL14	Family
J [auth M]	IPR019972	Large ribosomal subunit protein uL14, conserved site	Conserved Site
K [auth N]	IPR005749	Large ribosomal subunit protein uL15, bacterial-type	Family
K [auth N]	IPR021131	Large ribosomal subunit protein uL15/eL18	Domain
K [auth N]	IPR030878	Large ribosomal subunit protein uL15	Family
K [auth N]	IPR001196	Large ribosomal subunit protein uL15, conserved site	Conserved Site
K [auth N]	IPR036227	Large ribosomal subunit protein uL15/eL18 superfamily	Homologous Superfamily
L [auth O]	IPR036920	Large ribosomal subunit protein uL16 superfamily	Homologous Superfamily
L [auth O]	IPR020798	Large ribosomal subunit protein uL16, conserved site	Conserved Site
L [auth O]	IPR000114	Large ribosomal subunit protein uL16, bacterial-type	Family
L [auth O]	IPR016180	Large ribosomal subunit protein uL16 domain	Domain
L [auth O]	IPR047873	Large ribosomal subunit protein uL16	Family
M [auth P]	IPR036373	Large ribosomal subunit protein bL17 superfamily	Homologous Superfamily
M [auth P]	IPR047859	Large ribosomal subunit protein bL17, conserved site	Conserved Site
M [auth P]	IPR000456	Large ribosomal subunit protein bL17	Family
N [auth Q]	IPR005484	Large ribosomal subunit protein uL18	Family
N [auth Q]	IPR004389	Large ribosomal subunit protein uL18, bacterial-type	Family
O [auth R]	IPR001857	Large ribosomal subunit protein bL19	Family
O [auth R]	IPR038657	Large ribosomal subunit protein bL19 superfamily	Homologous Superfamily
O [auth R]	IPR018257	Large ribosomal subunit protein bL19, conserved site	Conserved Site
O [auth R]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
P [auth S]	IPR049946	Large ribosomal subunit protein bL20, conserved site	Conserved Site
P [auth S]	IPR035566	Ribosomal protein bL20, C-terminal	Homologous Superfamily
P [auth S]	IPR005813	Large ribosomal subunit protein bL20	Family
Q [auth T]	IPR028909	Large ribosomal subunit protein bL21-like	Family
Q [auth T]	IPR001787	Large ribosomal subunit protein bL21	Family
Q [auth T]	IPR036164	Large ribosomal subunit protein bL21-like superfamily	Homologous Superfamily
Q [auth T]	IPR018258	Large ribosomal subunit protein bL21, conserved site	Conserved Site
R [auth U]	IPR047867	Large ribosomal subunit protein uL22, bacterial/organelle-type	Family
R [auth U]	IPR018260	Large ribosomal subunit protein uL22, conserved site	Conserved Site
R [auth U]	IPR036394	Ribosomal protein uL22 superfamily	Homologous Superfamily
R [auth U]	IPR001063	Large ribosomal subunit protein uL22	Family
R [auth U]	IPR005727	Large ribosomal subunit protein uL22, bacterial/chloroplast-type	Family
S [auth V]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
S [auth V]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
S [auth V]	IPR013025	Large ribosomal subunit protein uL23-like	Family
T [auth W]	IPR003256	Large ribosomal subunit protein uL24	Family
T [auth W]	IPR041988	Large ribosomal subunit protein uL24, KOW domain	Domain
T [auth W]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
T [auth W]	IPR005824	KOW	Domain
T [auth W]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
T [auth W]	IPR005825	Large ribosomal subunit protein uL24, conserved site	Conserved Site
U [auth Y]	IPR001684	Large ribosomal subunit protein bL27	Family
U [auth Y]	IPR018261	Large ribosomal subunit protein bL27, conserved site	Conserved Site
V [auth Z]	IPR001383	Large ribosomal subunit protein bL28, bacterial-type	Family
V [auth Z]	IPR037147	Large ribosomal subunit protein bL28 superfamily	Homologous Superfamily
V [auth Z]	IPR050096	Bacterial ribosomal protein bL28	Family
V [auth Z]	IPR026569	Large ribosomal subunit protein bL28	Family
V [auth Z]	IPR034704	Large ribosomal subunit protein bL28/bL31-like superfamily	Homologous Superfamily
W [auth 1]	IPR050063	Universal ribosomal protein uL29	Family
W [auth 1]	IPR001854	Large ribosomal subunit protein uL29	Family
W [auth 1]	IPR036049	Large ribosomal subunit protein uL29 superfamily	Homologous Superfamily
W [auth 1]	IPR018254	Large ribosomal subunit protein uL29, conserved site	Conserved Site
X [auth 2]	IPR036919	Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily	Homologous Superfamily
X [auth 2]	IPR005996	Large ribosomal subunit protein uL30, bacterial-type	Family
X [auth 2]	IPR016082	Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain	Domain
X [auth 2]	IPR018038	Large ribosomal subunit protein uL30, conserved site	Conserved Site
Y [auth 3]	IPR002150	Large ribosomal subunit protein bL31 type A/B	Family
Y [auth 3]	IPR042105	Large ribosomal subunit protein bL31 superfamily	Homologous Superfamily
Y [auth 3]	IPR027493	Large ribosomal subunit protein bL31 type B	Family
Y [auth 3]	IPR034704	Large ribosomal subunit protein bL28/bL31-like superfamily	Homologous Superfamily
Z [auth 4]	IPR002677	Large ribosomal subunit protein bL32	Family
Z [auth 4]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
Z [auth 4]	IPR044957	Large ribosomal subunit protein bL32, bacterial type	Family
AA [auth 5]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
AA [auth 5]	IPR038584	Large ribosomal subunit protein bL33 superfamily	Homologous Superfamily
AA [auth 5]	IPR001705	Large ribosomal subunit protein bL33	Family
AA [auth 5]	IPR018264	Large ribosomal subunit protein bL33, conserved site	Conserved Site
BA [auth 6]	IPR020939	Large ribosomal subunit protein bL34, conserved site	Conserved Site
BA [auth 6]	IPR000271	Large ribosomal subunit protein bL34	Family
CA [auth 7]	IPR021137	Large ribosomal subunit protein bL35-like	Family
CA [auth 7]	IPR018265	Large ribosomal subunit protein bL35, conserved site	Conserved Site
CA [auth 7]	IPR001706	Large ribosomal subunit protein bL35	Family
CA [auth 7]	IPR037229	Large ribosomal subunit protein bL35 superfamily	Homologous Superfamily
DA [auth 8]	IPR000473	Large ribosomal subunit protein bL36	Family
DA [auth 8]	IPR035977	Large ribosomal subunit protein bL36 superfamily	Homologous Superfamily
D [auth C]	IPR022669	Large ribosomal subunit protein uL2, C-terminal	Domain
D [auth C]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
D [auth C]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
D [auth C]	IPR022671	Large ribosomal subunit protein uL2, conserved site	Conserved Site
D [auth C]	IPR005880	Large ribosomal subunit protein uL2, bacterial/organellar-type	Family
D [auth C]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
D [auth C]	IPR022666	Large ribosomal subunit protein uL2, RNA-binding domain	Domain
D [auth C]	IPR014726	Large ribosomal subunit protein uL2, domain 3	Homologous Superfamily
D [auth C]	IPR002171	Large ribosomal subunit protein uL2	Family
E [auth D]	IPR019926	Large ribosomal subunit protein uL3, conserved site	Conserved Site
E [auth D]	IPR019927	Large ribosomal subunit protein uL3, bacterial/organelle-type	Family
E [auth D]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
E [auth D]	IPR000597	Large ribosomal subunit protein uL3	Family
F [auth E]	IPR013005	Large ribosomal subunit protein uL4-like	Family
F [auth E]	IPR002136	Large ribosomal subunit protein uL4	Family
F [auth E]	IPR023574	Large ribosomal subunit protein uL4 domain superfamily	Homologous Superfamily
G [auth F]	IPR020929	Large ribosomal subunit protein uL5, conserved site	Conserved Site
G [auth F]	IPR022803	Large ribosomal subunit protein uL5 domain superfamily	Homologous Superfamily
G [auth F]	IPR031309	Large ribosomal subunit protein uL5, C-terminal	Domain
G [auth F]	IPR031310	Large ribosomal subunit protein uL5, N-terminal	Domain
G [auth F]	IPR020930	Large ribosomal subunit protein uL5, bacterial-type	Family
G [auth F]	IPR002132	Large ribosomal subunit protein uL5	Family
H [auth G]	IPR020040	Large ribosomal subunit protein uL6, alpha-beta domain	Domain
H [auth G]	IPR036789	Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily	Homologous Superfamily
H [auth G]	IPR000702	Large ribosomal subunit protein uL6-like	Family
H [auth G]	IPR019906	Large ribosomal subunit protein uL6, bacterial-type	Family
H [auth G]	IPR002358	Large ribosomal subunit protein uL6, conserved site	Conserved Site
I [auth L]	IPR023563	Large ribosomal subunit protein uL13, conserved site	Conserved Site
I [auth L]	IPR005822	Large ribosomal subunit protein uL13	Family
I [auth L]	IPR036899	Large ribosomal subunit protein uL13 superfamily	Homologous Superfamily
I [auth L]	IPR005823	Large ribosomal subunit protein uL13, bacterial-type	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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8UUA

Cryo-EM structure of the Listeria innocua 50S ribosomal subunit in complex with HflXr (structure III)

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage