8UOA

Structure of the synaptic vesicle protein 2A Luminal domain in complex with a nanobody

External Resource: Annotation

SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
B	Heavy Chain	IGHV1	-	synaptic vesicle glycoprotein 2a	SAbDab (2024-08-23)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Synaptic vesicle glycoprotein 2A	protein binding binding kinase binding enzyme binding protein kinase binding transporter activity transmembrane transporter activity	regulation of localization regulation of biological process nitrogen compound transport organic anion transport gamma-aminobutyric acid secretion carboxylic acid transport regulation of gamma-aminobutyric acid secretion regulation of transport transport secretion biological regulation acid secretion establishment of localization regulation of secretion organic acid transport regulation of localization regulation of biological process nitrogen compound transport organic anion transport gamma-aminobutyric acid secretion carboxylic acid transport regulation of gamma-aminobutyric acid secretion regulation of transport transport secretion biological regulation acid secretion establishment of localization regulation of secretion organic acid transport amino acid transport amine transport localization gamma-aminobutyric acid transport regulation of organic acid transport regulation of amino acid transport regulation of amine transport cellular localization regulated exocytosis synaptic vesicle priming signaling synaptic vesicle cycle synaptic vesicle exocytosis vesicle-mediated transport cell communication vesicle-mediated transport in synapse cellular component organization cellular component biogenesis synaptic signaling cellular component assembly secretion by cell signal release establishment of localization in cell protein-containing complex assembly cellular component organization or biogenesis trans-synaptic signaling neurotransmitter secretion protein-containing complex organization export from cell cell-cell signaling neurotransmitter transport chemical synaptic transmission signal release from synapse exocytosis anterograde trans-synaptic signaling exocytic process cellular process inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis	neuromuscular junction synapse cell junction cellular anatomical entity presynapse presynaptic active zone cell-cell junction anchoring junction somatodendritic compartment cell body neuronal cell body cell periphery plasma membrane membrane neuromuscular junction synapse cell junction cellular anatomical entity presynapse presynaptic active zone cell-cell junction anchoring junction somatodendritic compartment cell body neuronal cell body cell periphery plasma membrane membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle transport vesicle membrane endomembrane system intracellular organelle bounding membrane of organelle cytoplasmic vesicle vesicle membrane synaptic vesicle synaptic vesicle membrane vesicle transport vesicle exocytic vesicle membrane intracellular membrane-bounded organelle cytoplasmic vesicle membrane organelle secretory vesicle cytoplasm organelle membrane exocytic vesicle cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection GABA-ergic synapse glutamatergic synapse endoplasmic reticulum
B	Nanobody	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR022308	Synaptic vesicle protein SV2	Family
A	IPR011701	Major facilitator superfamily	Family
A	IPR005828	Major facilitator, sugar transporter-like	Family
A	IPR005829	Sugar transporter, conserved site	Conserved Site
A	IPR036259	MFS transporter superfamily	Homologous Superfamily
A	IPR020846	Major facilitator superfamily domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q7L0J3	Partial Epilepsy Treatment Adjunct astrocytic tumor breast carcinoma Gaucher disease large cell medulloblastoma malignant ependymoma medulloblastoma ovarian cancer schizophrenia atypical teratoid rhabdoid tumor epilepsy glioblastoma lung cancer malignant glioma partial epilepsy Partial Epilepsy Treatment Adjunct astrocytic tumor breast carcinoma Gaucher disease large cell medulloblastoma malignant ependymoma medulloblastoma ovarian cancer schizophrenia atypical teratoid rhabdoid tumor epilepsy glioblastoma lung cancer malignant glioma partial epilepsy botulism idiopathic scoliosis lung carcinoma malignant mesothelioma non-small cell lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.