Annotations: 8UEM

The CryoEM structure of the high affinity Carbon monoxide dehydrogenase from Mycobacterium smegmatis

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	RasGEF	e8uemC01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RasGEF	ECOD (v294.2)
B	RasGEF	e8uemB01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RasGEF	ECOD (v294.2)
A	RasGEF	e8uemA01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RasGEF	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Source
C, F	PF01799	[2Fe-2S] binding domain (Fer2_2)	[2Fe-2S] binding domain	Domain
C, F	PF00111	2Fe-2S iron-sulfur cluster binding domain (Fer2)	2Fe-2S iron-sulfur cluster binding domain	Domain
B, E	PF00941	FAD binding domain in molybdopterin dehydrogenase (FAD_binding_5)	FAD binding domain in molybdopterin dehydrogenase	Domain
B, E	PF03450	CO dehydrogenase flavoprotein C-terminal domain (CO_deh_flav_C)	CO dehydrogenase flavoprotein C-terminal domain	Domain
A, D	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain (Ald_Xan_dh_C)	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	Domain
A, D	PF20256	Molybdopterin cofactor-binding domain (MoCoBD_2)	Molybdopterin cofactor-binding domain	Domain
A, D	PF02738	Molybdopterin cofactor-binding domain (MoCoBD_1)	Molybdopterin cofactor-binding domain	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F	[2Fe-2S] binding domain protein	oxidoreductase activity catalytic activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	-
B, E	Carbon monoxide dehydrogenase medium chain	FAD binding flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity	-	-
A, D	Carbon monoxide dehydrogenase (Large chain), CoxL	oxidoreductase activity catalytic activity cation binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity, acting on the aldehyde or oxo group of donors copper ion binding molybdenum ion binding	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F	IPR002888	[2Fe-2S]-binding	Domain
C, F	IPR036010	2Fe-2S ferredoxin-like superfamily	Homologous Superfamily
C, F	IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	Domain
C, F	IPR036884	[2Fe-2S]-binding domain superfamily	Homologous Superfamily
C, F	IPR051452	Diverse Oxidoreductases	Family
C, F	IPR012675	Beta-grasp domain superfamily	Homologous Superfamily
B, E	IPR016167	FAD-binding, type PCMH, subdomain 1	Homologous Superfamily
B, E	IPR036683	CO dehydrogenase flavoprotein, C-terminal domain superfamily	Homologous Superfamily
B, E	IPR051312	Diverse Substrate Oxidoreductases	Family
B, E	IPR036318	FAD-binding, type PCMH-like superfamily	Homologous Superfamily
B, E	IPR016169	FAD-binding, type PCMH, subdomain 2	Homologous Superfamily
B, E	IPR016166	FAD-binding domain, PCMH-type	Domain
B, E	IPR005107	CO dehydrogenase flavoprotein, C-terminal	Domain
B, E	IPR002346	Molybdopterin dehydrogenase, FAD-binding	Domain
A, D	IPR000674	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	Domain
A, D	IPR012780	Carbon-monoxide dehydrogenase, large subunit	Family
A, D	IPR036856	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily	Homologous Superfamily
A, D	IPR037165	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily	Homologous Superfamily
A, D	IPR046867	Aldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domain	Domain
A, D	IPR016208	Aldehyde oxidase/xanthine dehydrogenase-like	Family
A, D	IPR008274	Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8UEM | pdb_00008uem

The CryoEM structure of the high affinity Carbon monoxide dehydrogenase from Mycobacterium smegmatis

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage