8U11 | pdb_00008u11

In situ cryo-EM structure of bacteriophage P22 gp1:gp5:gp4: gp10: gp9 N-term complex in conformation 2 at 3.1A resolution


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth G]SCOP2B SuperfamilyPhage coat protein-like 8054154 3001529 SCOP2B (2022-06-29)
YA [auth A]SCOP2B SuperfamilyPhage coat protein-like 8054154 3001529 SCOP2B (2022-06-29)
XA [auth C]SCOP2B SuperfamilyPhage coat protein-like 8054154 3001529 SCOP2B (2022-06-29)
WA [auth E]SCOP2B SuperfamilyPhage coat protein-like 8054154 3001529 SCOP2B (2022-06-29)
FB [auth J]SCOP2B SuperfamilyPhage coat protein-like 8054154 3001529 SCOP2B (2022-06-29)
EB [auth H]SCOP2B SuperfamilyPhage coat protein-like 8054154 3001529 SCOP2B (2022-06-29)
DB [auth F]SCOP2B SuperfamilyPhage coat protein-like 8054154 3001529 SCOP2B (2022-06-29)
CB [auth B]SCOP2B SuperfamilyPhage coat protein-like 8054154 3001529 SCOP2B (2022-06-29)
BB [auth D]SCOP2B SuperfamilyPhage coat protein-like 8054154 3001529 SCOP2B (2022-06-29)
AB [auth I]SCOP2B SuperfamilyPhage coat protein-like 8054154 3001529 SCOP2B (2022-06-29)
Z [auth y]SCOP2B SuperfamilyYqbG/phage connector protein-like 8104062 3001980 SCOP2B (2022-06-29)
VA [auth x]SCOP2B SuperfamilyYqbG/phage connector protein-like 8104062 3001980 SCOP2B (2022-06-29)
TA [auth v]SCOP2B SuperfamilyYqbG/phage connector protein-like 8104062 3001980 SCOP2B (2022-06-29)
RA [auth u]SCOP2B SuperfamilyYqbG/phage connector protein-like 8104062 3001980 SCOP2B (2022-06-29)
PA [auth t]SCOP2B SuperfamilyYqbG/phage connector protein-like 8104062 3001980 SCOP2B (2022-06-29)
NA [auth s]SCOP2B SuperfamilyYqbG/phage connector protein-like 8104062 3001980 SCOP2B (2022-06-29)
LA [auth r]SCOP2B SuperfamilyYqbG/phage connector protein-like 8104062 3001980 SCOP2B (2022-06-29)
JA [auth q]SCOP2B SuperfamilyYqbG/phage connector protein-like 8104062 3001980 SCOP2B (2022-06-29)
HA [auth p]SCOP2B SuperfamilyYqbG/phage connector protein-like 8104062 3001980 SCOP2B (2022-06-29)
FA [auth o]SCOP2B SuperfamilyYqbG/phage connector protein-like 8104062 3001980 SCOP2B (2022-06-29)
DA [auth n]SCOP2B SuperfamilyYqbG/phage connector protein-like 8104062 3001980 SCOP2B (2022-06-29)
BA [auth m]SCOP2B SuperfamilyYqbG/phage connector protein-like 8104062 3001980 SCOP2B (2022-06-29)
X [auth 24]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
W [auth 23]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
V [auth 22]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
U [auth 21]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
T [auth 20]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
S [auth 19]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
R [auth 18]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
Q [auth 17]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
P [auth 16]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
O [auth 15]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
N [auth 14]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
M [auth 13]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
L [auth 12]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
K [auth 11]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
J [auth 10]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
I [auth 9]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
H [auth 8]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)
G [auth 7]SCOP2B SuperfamilyHead-binding domain of phage P22 tailspike protein 8043159 3002008 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth G]e8u11G1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
YA [auth A]e8u11A1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
XA [auth C]e8u11C1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
WA [auth E]e8u11E1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
FB [auth J]e8u11J1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
EB [auth H]e8u11H1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
DB [auth F]e8u11F1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
CB [auth B]e8u11B1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
BB [auth D]e8u11D1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
AB [auth I]e8u11I1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
Z [auth y]e8u11y1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
VA [auth x]e8u11x1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
TA [auth v]e8u11v1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
RA [auth u]e8u11u1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
PA [auth t]e8u11t1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
NA [auth s]e8u11s1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
LA [auth r]e8u11r1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
JA [auth q]e8u11q1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
HA [auth p]e8u11p1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
FA [auth o]e8u11o1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
DA [auth n]e8u11n1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
BA [auth m]e8u11m1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
Y [auth a]e8u11a1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
UA [auth g]e8u11g1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
SA [auth h]e8u11h1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
QA [auth j]e8u11j1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
OA [auth i]e8u11i1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
MA [auth k]e8u11k1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
KA [auth f]e8u11f1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
IA [auth l]e8u11l1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
GA [auth e]e8u11e1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
EA [auth d]e8u11d1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
CA [auth c]e8u11c1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
AA [auth b]e8u11b1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
X [auth 24]e8u11241 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
W [auth 23]e8u11231 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
V [auth 22]e8u11221 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
U [auth 21]e8u11211 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
T [auth 20]e8u11201 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
S [auth 19]e8u11191 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
R [auth 18]e8u11181 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
Q [auth 17]e8u11171 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
P [auth 16]e8u11161 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
O [auth 15]e8u11151 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
N [auth 14]e8u11141 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
M [auth 13]e8u11131 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
L [auth 12]e8u11121 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
K [auth 11]e8u11111 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
J [auth 10]e8u11101 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
I [auth 9]e8u1191 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
H [auth 8]e8u1181 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)
G [auth 7]e8u1171 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Major capsid protein
Peptidoglycan hydrolase gp4
Portal protein-
Tail spike protein
Packaged DNA stabilization protein gp10- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR024659Major capsid protein Gp5Family
IPR038258Peptidoglycan hydrolase Gp4 superfamilyHomologous Superfamily
IPR020362Tail accessory factor GP4Family
IPR032427Phage P22-like portal proteinFamily
IPR012332Autotransporter, pectate lyase C-like domain superfamilyHomologous Superfamily
IPR015331P22 tailspike C-terminal domainDomain
IPR036730Phage P22 tailspike-like, N-terminal domain superfamilyHomologous Superfamily
IPR009093Bacteriophage P22 tailspike, N-terminalDomain
IPR011050Pectin lyase fold/virulence factorHomologous Superfamily
IPR021098Bacteriophage P22, Gp10, DNA-stabilisingFamily