8TU2 | pdb_00008tu2

The Capsid of Rat Bocavirus

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	V-set	e8tu2A1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: V-set	ECOD (v294.2)
AB [auth u]		e8tu2u1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
B		e8tu2B1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
CB [auth w]		e8tu2w1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
D		e8tu2D1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
DB [auth x]		e8tu2x1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
E		e8tu2E1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
EA [auth 5]		e8tu251	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
EB [auth y]		e8tu2y1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
F		e8tu2F1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
FB [auth z]		e8tu2z1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
G		e8tu2G1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
GA [auth a]		e8tu2a1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
GB [auth 7]		e8tu271	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
H		e8tu2H1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
I		e8tu2I1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
IA [auth c]		e8tu2c1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
J		e8tu2J1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
JA [auth d]		e8tu2d1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
L		e8tu2L1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
LA [auth f]		e8tu2f1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
N		e8tu2N1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
NA [auth h]		e8tu2h1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
OA [auth i]		e8tu2i1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
PA [auth j]		e8tu2j1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
Q		e8tu2Q1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
QA [auth k]		e8tu2k1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
R		e8tu2R1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
RA [auth l]		e8tu2l1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
S		e8tu2S1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
SA [auth m]		e8tu2m1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
TA [auth n]		e8tu2n1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
U		e8tu2U1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
V		e8tu2V1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
W		e8tu2W1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
WA [auth q]		e8tu2q1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
X		e8tu2X1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
Y		e8tu2Y1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
Z		e8tu2Z1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
ZA [auth t]		e8tu2t1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
YA [auth s]		e8tu2s1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
XA [auth r]		e8tu2r1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
VA [auth p]		e8tu2p1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
UA [auth o]		e8tu2o1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
T		e8tu2T1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
P		e8tu2P1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
O		e8tu2O1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
MA [auth g]		e8tu2g1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
M		e8tu2M1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
KA [auth e]		e8tu2e1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
K		e8tu2K1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
HB [auth 8]		e8tu281	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
HA [auth b]		e8tu2b1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
FA [auth 6]		e8tu261	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
DA [auth 4]		e8tu241	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
CA [auth 3]		e8tu231	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
C		e8tu2C1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
BB [auth v]		e8tu2v1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
BA [auth 2]		e8tu221	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
AA [auth 1]		e8tu211	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth 1], AB [auth u], B, BA [auth 2], A, AA [auth 1], AB [auth u], B, BA [auth 2], BB [auth v], C, CA [auth 3], CB [auth w], D, DA [auth 4], DB [auth x], E, EA [auth 5], EB [auth y], F, FA [auth 6], FB [auth z], G, GA [auth a], GB [auth 7], H, HA [auth b], HB [auth 8], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	VP2	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth 1], AB [auth u], B, BA [auth 2], A, AA [auth 1], AB [auth u], B, BA [auth 2], BB [auth v], C, CA [auth 3], CB [auth w], D, DA [auth 4], DB [auth x], E, EA [auth 5], EB [auth y], F, FA [auth 6], FB [auth z], G, GA [auth a], GB [auth 7], H, HA [auth b], HB [auth 8], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth 1], AB [auth u], B, BA [auth 2], A, AA [auth 1], AB [auth u], B, BA [auth 2], BB [auth v], C, CA [auth 3], CB [auth w], D, DA [auth 4], DB [auth x], E, EA [auth 5], EB [auth y], F, FA [auth 6], FB [auth z], G, GA [auth a], GB [auth 7], H, HA [auth b], HB [auth 8], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth 1], AB [auth u], B, BA [auth 2], A, AA [auth 1], AB [auth u], B, BA [auth 2], BB [auth v], C, CA [auth 3], CB [auth w], D, DA [auth 4], DB [auth x], E, EA [auth 5], EB [auth y], F, FA [auth 6], FB [auth z], G, GA [auth a], GB [auth 7], H, HA [auth b], HB [auth 8], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.