8TRZ | pdb_00008trz

Cryo-EM structure of N-glycosylated Pomacea canaliculata hemocyanin

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
T	CoV_NSP10	e8trzT1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
S	CoV_NSP10	e8trzS1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
R	CoV_NSP10	e8trzR1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
Q	CoV_NSP10	e8trzQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
P	CoV_NSP10	e8trzP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
O	CoV_NSP10	e8trzO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
N	CoV_NSP10	e8trzN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
M	CoV_NSP10	e8trzM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
L	CoV_NSP10	e8trzL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
K	CoV_NSP10	e8trzK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
J	CoV_NSP10	e8trzJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
I	CoV_NSP10	e8trzI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
H	CoV_NSP10	e8trzH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
G	CoV_NSP10	e8trzG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
F	CoV_NSP10	e8trzF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
E	CoV_NSP10	e8trzE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
D	CoV_NSP10	e8trzD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
C	CoV_NSP10	e8trzC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
B	CoV_NSP10	e8trzB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_NSP10	ECOD (v295)
A	F5_F8_type_C	e8trzA02	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: F5_F8_type_C	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	PF00264	Common central domain of tyrosinase (Tyrosinase)	Common central domain of tyrosinase	This family also contains polyphenol oxidases and some hemocyanins. Binds two copper ions via two sets of three histidines. This family is related to Pfam:PF00372.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	PF14830	Haemocyanin beta-sandwich (Haemocyan_bet_s)	Haemocyanin beta-sandwich	This antiparallel beta sandwich domain occurs in mollusc haemocyanins. Each mollusc haemocyanin contains several globular oxygen binding functional units. Each unit consists of an alpha-helical copper binding domain (Pfam:PF00264) and an antiparallel ...	This antiparallel beta sandwich domain occurs in mollusc haemocyanins. Each mollusc haemocyanin contains several globular oxygen binding functional units. Each unit consists of an alpha-helical copper binding domain (Pfam:PF00264) and an antiparallel beta sandwich domain [1-2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	Hemocyanin	oxidoreductase activity catalytic activity oxygen carrier activity molecular carrier activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR050316	Tyrosinase-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR008922	Di-copper centre-containing domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR028999	Haemocyanin, beta-sandwich domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR036848	Haemocyanin C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR002227	Tyrosinase copper-binding domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.