8TRO | pdb_00008tro

Rod from high-resolution phycobilisome quenched by OCP (local refinement)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BA [auth R]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
DA [auth T]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
F [auth 5]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
FA [auth V]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
H [auth 7]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
HA [auth X]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
J [auth 9]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
L [auth B]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
P [auth F]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
T [auth J]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
V [auth L]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
X [auth N]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
Z [auth P]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
R [auth H]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
N [auth D]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
JA [auth Z]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
MA [auth c]SCOP2B SuperfamilyPhycobilisome linker domain-like 8052324 3002104 SCOP2B (2022-06-29)
MA [auth c]SCOP2B SuperfamilyPhycobilisome linker domain-like 8052325 3002104 SCOP2B (2022-06-29)
LA [auth b]SCOP2B SuperfamilyPhycobilisome linker domain-like 8052317 3002104 SCOP2B (2022-06-29)
LA [auth b]SCOP2B SuperfamilyPhycobilisome linker domain-like 8052316 3002104 SCOP2B (2022-06-29)
A [auth 0]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
CA [auth S]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
EA [auth U]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
G [auth 6]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
GA [auth W]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
IA [auth Y]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
M [auth C]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
S [auth I]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
U [auth K]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
W [auth M]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
Y [auth O]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
Q [auth G]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
O [auth E]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
K [auth A]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
I [auth 8]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
AA [auth Q]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BA [auth R]CoV_NSP10e8troR1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
D [auth 3]CoV_NSP10e8tro31 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
DA [auth T]CoV_NSP10e8troT1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
F [auth 5]CoV_NSP10e8tro51 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
FA [auth V]CoV_NSP10e8troV1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
H [auth 7]CoV_NSP10e8tro71 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
HA [auth X]CoV_NSP10e8troX1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
J [auth 9]CoV_NSP10e8tro91 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
L [auth B]CoV_NSP10e8troB1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
P [auth F]CoV_NSP10e8troF1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
T [auth J]CoV_NSP10e8troJ1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
V [auth L]CoV_NSP10e8troL1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
X [auth N]CoV_NSP10e8troN1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
Z [auth P]CoV_NSP10e8troP1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
R [auth H]CoV_NSP10e8troH1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
N [auth D]CoV_NSP10e8troD1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
JA [auth Z]CoV_NSP10e8troZ1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
B [auth 1]CoV_NSP10e8tro11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
NA [auth d]CoV_NSP10e8trod1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
MA [auth c]CoV_NSP10e8troc1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
LA [auth b]CoV_NSP10e8trob1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
KA [auth a]CoV_NSP10e8troa1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
A [auth 0]CoV_NSP10e8tro01 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
CA [auth S]CoV_NSP10e8troS1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
E [auth 4]CoV_NSP10e8tro41 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
EA [auth U]CoV_NSP10e8troU1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
G [auth 6]CoV_NSP10e8tro61 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
GA [auth W]CoV_NSP10e8troW1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
IA [auth Y]CoV_NSP10e8troY1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
M [auth C]CoV_NSP10e8troC1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
S [auth I]CoV_NSP10e8troI1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
U [auth K]CoV_NSP10e8troK1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
W [auth M]CoV_NSP10e8troM1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
Y [auth O]CoV_NSP10e8troO1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
Q [auth G]CoV_NSP10e8troG1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
O [auth E]CoV_NSP10e8troE1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
K [auth A]CoV_NSP10e8troA1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
I [auth 8]CoV_NSP10e8tro81 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
C [auth 2]CoV_NSP10e8tro21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)
AA [auth Q]CoV_NSP10e8troQ1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: CoV_NSP10ECOD (v295)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00502Phycobilisome protein (Phycobilisome)Phycobilisome proteinDomain
PF00427Phycobilisome Linker polypeptide (PBS_linker_poly)Phycobilisome Linker polypeptide- Family
PF01383CpcD/allophycocyanin linker domain (CpcD)CpcD/allophycocyanin linker domainDomain
PF00502Phycobilisome protein (Phycobilisome)Phycobilisome proteinDomain
PF00427Phycobilisome Linker polypeptide (PBS_linker_poly)Phycobilisome Linker polypeptide- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C-phycocyanin beta subunit-
NA [auth d]Phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod-
MA [auth c]Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 2-
LA [auth b]Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 1-
KA [auth a]Phycobilisome rod-core linker polypeptide CpcG-
C-phycocyanin alpha subunit-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR038719Phycobilisome, alpha/beta subunit superfamilyHomologous Superfamily
IPR006247Phycocyanin, beta subunitFamily
IPR009050Globin-like superfamilyHomologous Superfamily
IPR012128Phycobilisome, alpha/beta subunitFamily
NA [auth d]IPR008213CpcD-like domainDomain
MA [auth c]IPR016470Phycobilisome linker proteinFamily
MA [auth c]IPR008213CpcD-like domainDomain
MA [auth c]IPR001297Phycobilisome linker domainDomain
MA [auth c]IPR038255Phycobilisome linker domain superfamilyHomologous Superfamily
LA [auth b]IPR016470Phycobilisome linker proteinFamily
LA [auth b]IPR008213CpcD-like domainDomain
LA [auth b]IPR001297Phycobilisome linker domainDomain
LA [auth b]IPR038255Phycobilisome linker domain superfamilyHomologous Superfamily
KA [auth a]IPR016470Phycobilisome linker proteinFamily
KA [auth a]IPR001297Phycobilisome linker domainDomain
KA [auth a]IPR038255Phycobilisome linker domain superfamilyHomologous Superfamily
IPR038719Phycobilisome, alpha/beta subunit superfamilyHomologous Superfamily
IPR006246Phycocyanin, alpha subunitFamily
IPR009050Globin-like superfamilyHomologous Superfamily
IPR012128Phycobilisome, alpha/beta subunitFamily