Rod from high-resolution phycobilisome quenched by OCP (local refinement)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| MA [auth c] | SCOP2B Superfamily | Phycobilisome linker domain-like | 8052324 | 3002104 | SCOP2B (2022-06-29) |
| MA [auth c] | SCOP2B Superfamily | Phycobilisome linker domain-like | 8052325 | 3002104 | SCOP2B (2022-06-29) |
| LA [auth b] | SCOP2B Superfamily | Phycobilisome linker domain-like | 8052317 | 3002104 | SCOP2B (2022-06-29) |
| LA [auth b] | SCOP2B Superfamily | Phycobilisome linker domain-like | 8052316 | 3002104 | SCOP2B (2022-06-29) |
| Z [auth P] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| X [auth N] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| V [auth L] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| T [auth J] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| R [auth H] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| P [auth F] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| N [auth D] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| L [auth B] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| JA [auth Z] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| J [auth 9] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| HA [auth X] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| H [auth 7] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| FA [auth V] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| F [auth 5] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| DA [auth T] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| D [auth 3] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| BA [auth R] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| B [auth 1] | SCOP2B Superfamily | Globin-like | 8064834 | 3000554 | SCOP2B (2022-06-29) |
| Y [auth O] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| W [auth M] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| U [auth K] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| S [auth I] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| Q [auth G] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| O [auth E] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| M [auth C] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| K [auth A] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| IA [auth Y] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| I [auth 8] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| GA [auth W] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| G [auth 6] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| EA [auth U] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| E [auth 4] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| CA [auth S] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| C [auth 2] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| AA [auth Q] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
| A [auth 0] | SCOP2B Superfamily | Globin-like | 8064876 | 3000554 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| NA [auth d] | WD40 | e8trod1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| MA [auth c] | WD40 | e8troc1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| LA [auth b] | WD40 | e8trob1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| KA [auth a] | WD40 | e8troa1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| Z [auth P] | WD40 | e8troP1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| X [auth N] | WD40 | e8troN1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| V [auth L] | WD40 | e8troL1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| T [auth J] | WD40 | e8troJ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| R [auth H] | WD40 | e8troH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| P [auth F] | WD40 | e8troF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| N [auth D] | WD40 | e8troD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| L [auth B] | WD40 | e8troB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| JA [auth Z] | WD40 | e8troZ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| J [auth 9] | WD40 | e8tro91 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| HA [auth X] | WD40 | e8troX1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| H [auth 7] | WD40 | e8tro71 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| FA [auth V] | WD40 | e8troV1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| F [auth 5] | WD40 | e8tro51 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| DA [auth T] | WD40 | e8troT1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| D [auth 3] | WD40 | e8tro31 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| BA [auth R] | WD40 | e8troR1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| B [auth 1] | WD40 | e8tro11 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| Y [auth O] | WD40 | e8troO1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| W [auth M] | WD40 | e8troM1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| U [auth K] | WD40 | e8troK1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| S [auth I] | WD40 | e8troI1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| Q [auth G] | WD40 | e8troG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| O [auth E] | WD40 | e8troE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| M [auth C] | WD40 | e8troC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| K [auth A] | WD40 | e8troA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| IA [auth Y] | WD40 | e8troY1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| I [auth 8] | WD40 | e8tro81 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| GA [auth W] | WD40 | e8troW1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| G [auth 6] | WD40 | e8tro61 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| EA [auth U] | WD40 | e8troU1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| E [auth 4] | WD40 | e8tro41 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| CA [auth S] | WD40 | e8troS1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| C [auth 2] | WD40 | e8tro21 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| AA [auth Q] | WD40 | e8troQ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| A [auth 0] | WD40 | e8tro01 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00502 | Phycobilisome protein (Phycobilisome) | Phycobilisome protein | Domain | ||
| PF00427 | Phycobilisome Linker polypeptide (PBS_linker_poly) | Phycobilisome Linker polypeptide | - | Family | |
| PF01383 | CpcD/allophycocyanin linker domain (CpcD) | CpcD/allophycocyanin linker domain | Domain | ||
| PF00502 | Phycobilisome protein (Phycobilisome) | Phycobilisome protein | Domain | ||
| PF00427 | Phycobilisome Linker polypeptide (PBS_linker_poly) | Phycobilisome Linker polypeptide | - | Family |














