8TRO | pdb_00008tro

Rod from high-resolution phycobilisome quenched by OCP (local refinement)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
MA [auth c]SCOP2B SuperfamilyPhycobilisome linker domain-like 8052324 3002104 SCOP2B (2022-06-29)
MA [auth c]SCOP2B SuperfamilyPhycobilisome linker domain-like 8052325 3002104 SCOP2B (2022-06-29)
LA [auth b]SCOP2B SuperfamilyPhycobilisome linker domain-like 8052317 3002104 SCOP2B (2022-06-29)
LA [auth b]SCOP2B SuperfamilyPhycobilisome linker domain-like 8052316 3002104 SCOP2B (2022-06-29)
Z [auth P]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
X [auth N]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
V [auth L]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
T [auth J]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
R [auth H]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
P [auth F]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
N [auth D]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
L [auth B]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
JA [auth Z]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
J [auth 9]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
HA [auth X]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
H [auth 7]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
FA [auth V]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
F [auth 5]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
DA [auth T]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
BA [auth R]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilyGlobin-like 8064834 3000554 SCOP2B (2022-06-29)
Y [auth O]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
W [auth M]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
U [auth K]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
S [auth I]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
Q [auth G]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
O [auth E]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
M [auth C]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
K [auth A]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
IA [auth Y]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
I [auth 8]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
GA [auth W]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
G [auth 6]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
EA [auth U]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
CA [auth S]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
AA [auth Q]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)
A [auth 0]SCOP2B SuperfamilyGlobin-like 8064876 3000554 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
NA [auth d]WD40e8trod1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
MA [auth c]WD40e8troc1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
LA [auth b]WD40e8trob1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
KA [auth a]WD40e8troa1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
Z [auth P]WD40e8troP1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
X [auth N]WD40e8troN1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
V [auth L]WD40e8troL1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
T [auth J]WD40e8troJ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
R [auth H]WD40e8troH1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
P [auth F]WD40e8troF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
N [auth D]WD40e8troD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
L [auth B]WD40e8troB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
JA [auth Z]WD40e8troZ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
J [auth 9]WD40e8tro91 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
HA [auth X]WD40e8troX1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
H [auth 7]WD40e8tro71 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
FA [auth V]WD40e8troV1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
F [auth 5]WD40e8tro51 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
DA [auth T]WD40e8troT1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
D [auth 3]WD40e8tro31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
BA [auth R]WD40e8troR1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
B [auth 1]WD40e8tro11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
Y [auth O]WD40e8troO1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
W [auth M]WD40e8troM1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
U [auth K]WD40e8troK1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
S [auth I]WD40e8troI1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
Q [auth G]WD40e8troG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
O [auth E]WD40e8troE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
M [auth C]WD40e8troC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
K [auth A]WD40e8troA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
IA [auth Y]WD40e8troY1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
I [auth 8]WD40e8tro81 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
GA [auth W]WD40e8troW1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
G [auth 6]WD40e8tro61 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
EA [auth U]WD40e8troU1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
E [auth 4]WD40e8tro41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
CA [auth S]WD40e8troS1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
C [auth 2]WD40e8tro21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
AA [auth Q]WD40e8troQ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
A [auth 0]WD40e8tro01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00502Phycobilisome protein (Phycobilisome)Phycobilisome proteinDomain
PF00427Phycobilisome Linker polypeptide (PBS_linker_poly)Phycobilisome Linker polypeptide- Family
PF01383CpcD/allophycocyanin linker domain (CpcD)CpcD/allophycocyanin linker domainDomain
PF00502Phycobilisome protein (Phycobilisome)Phycobilisome proteinDomain
PF00427Phycobilisome Linker polypeptide (PBS_linker_poly)Phycobilisome Linker polypeptide- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
NA [auth d]Phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod-
MA [auth c]Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 2-
LA [auth b]Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 1-
KA [auth a]Phycobilisome rod-core linker polypeptide CpcG-
C-phycocyanin beta subunit-
C-phycocyanin alpha subunit-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
NA [auth d]IPR008213CpcD-like domainDomain
MA [auth c]IPR016470Phycobilisome linker proteinFamily
MA [auth c]IPR008213CpcD-like domainDomain
MA [auth c]IPR001297Phycobilisome linker domainDomain
MA [auth c]IPR038255Phycobilisome linker domain superfamilyHomologous Superfamily
LA [auth b]IPR016470Phycobilisome linker proteinFamily
LA [auth b]IPR008213CpcD-like domainDomain
LA [auth b]IPR001297Phycobilisome linker domainDomain
LA [auth b]IPR038255Phycobilisome linker domain superfamilyHomologous Superfamily
KA [auth a]IPR016470Phycobilisome linker proteinFamily
KA [auth a]IPR001297Phycobilisome linker domainDomain
KA [auth a]IPR038255Phycobilisome linker domain superfamilyHomologous Superfamily
IPR038719Phycobilisome, alpha/beta subunit superfamilyHomologous Superfamily
IPR006247Phycocyanin, beta subunitFamily
IPR009050Globin-like superfamilyHomologous Superfamily
IPR012128Phycobilisome, alpha/beta subunitFamily
IPR038719Phycobilisome, alpha/beta subunit superfamilyHomologous Superfamily
IPR006246Phycocyanin, alpha subunitFamily
IPR009050Globin-like superfamilyHomologous Superfamily
IPR012128Phycobilisome, alpha/beta subunitFamily