Cryo-EM structure of Pseudomonas aeruginosa TonB-dependent transporter PhuR in complex with synthetic antibody and heme
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth L] | BRCT_2 | e8theL01 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: BRCT_2 | ECOD (v294.2) |
| B [auth H] | BRCT_2 | e8theH01 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: BRCT_2 | ECOD (v294.2) |
| A | BRCT_2 | e8theA01 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: BRCT_2 | ECOD (v294.2) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| C [auth L] | Light Chain | IGKV1 | Kappa | heme/hemoglobin uptake outer membrane receptor phur | SAbDab (2026-05-08) |
| B [auth H] | Heavy Chain | IGHV3 | - | heme/hemoglobin uptake outer membrane receptor phur | SAbDab (2026-05-08) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00593 | TonB dependent receptor-like, beta-barrel (TonB_dep_Rec_b-barrel) | TonB dependent receptor-like, beta-barrel | This entry represents the beta-barrel domain of TonB-dependent receptors, such as BtuB, CirA, FatA, FcuT, FecA, FepA, among others [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR039426 | TonB-dependent receptor-like | Family | |
| IPR037066 | TonB-dependent receptor, plug domain superfamily | Homologous Superfamily | |
| IPR010949 | TonB-dependent haemoglobin/transferrin/lactoferrin receptor | Family | |
| IPR011276 | TonB-dependent haem/haemoglobin receptor | Family | |
| IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | Homologous Superfamily | |
| IPR012910 | TonB-dependent receptor, plug domain | Domain | |
| IPR000531 | TonB-dependent receptor-like, beta-barrel | Domain |














