8TH5

Crystal Structure of the G3BP1 NTF2-like domain bound to the IDR1 of SARS-CoV-2 nucleocapsid protein P13L mutant

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF02136	Nuclear transport factor 2 (NTF2) domain (NTF2)	Nuclear transport factor 2 (NTF2) domain	This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Ras GTPase-activating protein-binding protein 1	ATP-dependent activity, acting on DNA DNA/RNA helicase activity catalytic activity, acting on DNA catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity, acting on RNA ATP-dependent activity molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity DNA helicase activity RNA binding ATP-dependent activity, acting on DNA DNA/RNA helicase activity catalytic activity, acting on DNA catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity, acting on RNA ATP-dependent activity molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity DNA helicase activity RNA binding binding organic cyclic compound binding nucleic acid binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding mRNA binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides RNA helicase activity endonuclease activity nuclease activity hydrolase activity, acting on ester bonds ribonucleoprotein complex binding protein-containing complex binding ribosomal small subunit binding ribosome binding	positive regulation of organelle organization regulation of cellular process positive regulation of cellular component organization regulation of cellular component organization stress granule assembly non-membrane-bounded organelle assembly positive regulation of biological process cellular component biogenesis cellular component organization cellular component assembly cellular component organization or biogenesis positive regulation of cellular process regulation of biological process organelle assembly positive regulation of organelle organization regulation of cellular process positive regulation of cellular component organization regulation of cellular component organization stress granule assembly non-membrane-bounded organelle assembly positive regulation of biological process cellular component biogenesis cellular component organization cellular component assembly cellular component organization or biogenesis positive regulation of cellular process regulation of biological process organelle assembly positive regulation of cellular component biogenesis biological regulation regulation of cellular component biogenesis regulation of organelle organization organelle organization regulation of organelle assembly cellular process positive regulation of stress granule assembly regulation of stress granule assembly positive regulation of organelle assembly cellular response to stimulus response to stimulus signaling negative regulation of signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication negative regulation of Wnt signaling pathway negative regulation of cellular process signal transduction Wnt signaling pathway regulation of signaling cell surface receptor signaling pathway regulation of Wnt signaling pathway negative regulation of response to stimulus negative regulation of signal transduction negative regulation of canonical Wnt signaling pathway regulation of response to stimulus regulation of cell communication biological process involved in interspecies interaction between organisms immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus small GTPase-mediated signal transduction Ras protein signal transduction intracellular signal transduction intracellular signaling cassette defense response to virus response to virus multicellular organismal process cellular biosynthetic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process regulation of biosynthetic process positive regulation of type I interferon production type I interferon production cellular metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process positive regulation of cellular biosynthetic process regulation of type I interferon production	anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction somatodendritic compartment cell body perikaryon neuronal cell body intracellular anatomical structure cytoplasmic ribonucleoprotein granule ribonucleoprotein granule intracellular organelle organelle anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction somatodendritic compartment cell body perikaryon neuronal cell body intracellular anatomical structure cytoplasmic ribonucleoprotein granule ribonucleoprotein granule intracellular organelle organelle intracellular non-membrane-bounded organelle cytoplasm supramolecular complex non-membrane-bounded organelle cytoplasmic stress granule cytosol protein-containing complex ribonucleoprotein complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle
K, L [auth P], M [auth L], N [auth M], O, K, L [auth P], M [auth L], N [auth M], O, P [auth Q], Q [auth N]	Nucleoprotein	molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity molecular sequestering activity protein sequestering activity RNA binding binding organic cyclic compound binding nucleic acid binding identical protein binding protein binding protein homodimerization activity protein dimerization activity RNA stem-loop binding molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity molecular sequestering activity protein sequestering activity RNA binding binding organic cyclic compound binding nucleic acid binding identical protein binding protein binding protein homodimerization activity protein dimerization activity RNA stem-loop binding MHC class I protein binding signaling receptor binding MHC protein binding	response to host defenses biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to defenses of other organism response to external stimulus response to biotic stimulus biological process involved in interaction with host biological process involved in symbiotic interaction response to host immune response response to host response to external biotic stimulus multicellular organismal process regulation of cellular process response to host defenses biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to defenses of other organism response to external stimulus response to biotic stimulus biological process involved in interaction with host biological process involved in symbiotic interaction response to host immune response response to host response to external biotic stimulus multicellular organismal process regulation of cellular process cellular biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process negative regulation of type I interferon production cytokine production negative regulation of cellular process regulation of cytokine production regulation of multicellular organismal process regulation of interferon-beta production interferon-beta production negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process type I interferon production cellular metabolic process negative regulation of metabolic process biological regulation negative regulation of cytokine production regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of interferon-beta production metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process negative regulation of multicellular organismal process regulation of metabolic process regulation of type I interferon production cellular response to stimulus positive regulation of cell communication positive regulation of response to biotic stimulus positive regulation of signal transduction pattern recognition receptor signaling pathway regulation of NLRP3 inflammasome complex assembly positive regulation of NLRP3 inflammasome complex assembly regulation of signal transduction intracellular signal transduction cell communication cellular component biogenesis immune response-activating signaling pathway cellular component assembly inflammasome-mediated signaling pathway positive regulation of immune response canonical inflammasome complex assembly regulation of immune system process signal transduction positive regulation of immune system process innate immune response-activating signaling pathway positive regulation of pattern recognition receptor signaling pathway immune response regulation of innate immune response positive regulation of intracellular signal transduction positive regulation of inflammasome-mediated signaling pathway regulation of inflammasome-mediated signaling pathway regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway NLRP3 inflammasome complex assembly positive regulation of defense response activation of innate immune response regulation of immune response inflammatory response activation of immune response cytoplasmic pattern recognition receptor signaling pathway regulation of defense response regulation of response to biotic stimulus regulation of cellular component organization positive regulation of cellular component organization regulation of response to external stimulus intracellular receptor signaling pathway signaling positive regulation of biological process regulation of cytoplasmic pattern recognition receptor signaling pathway positive regulation of response to stimulus cellular component organization regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of intracellular signal transduction regulation of response to stress response to stress innate immune response protein-containing complex assembly cellular component organization or biogenesis positive regulation of cellular process regulation of signaling positive regulation of innate immune response defense response protein-containing complex organization positive regulation of cellular component biogenesis defense response to symbiont regulation of cellular component biogenesis immune system process regulation of cell communication positive regulation of signaling virion assembly cytoplasmic capsid assembly viral process viral capsid assembly viral life cycle viral RNA genome packaging viral genome packaging	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell part host intracellular region cellular anatomical entity host cell cytoplasm part host intracellular organelle host extracellular space viral capsid virion component intracellular organelle host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell part host intracellular region cellular anatomical entity host cell cytoplasm part host intracellular organelle host extracellular space viral capsid virion component intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle MHC class I protein complex MHC protein complex cell periphery protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex cytoplasm host cell perinuclear region of cytoplasm extracellular region host cell Golgi apparatus ribonucleoprotein complex viral nucleocapsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR032710	NTF2-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR039539	Ras GTPase-activating protein-binding protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR000504	RNA recognition motif domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR018222	Nuclear transport factor 2, eukaryote	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR034374	G3BP1, RNA recognition motif	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR002075	Nuclear transport factor 2 domain	Domain
K, L [auth P], M [auth L], N [auth M], O, K, L [auth P], M [auth L], N [auth M], O, P [auth Q], Q [auth N]	IPR044344	Nucleocapsid (N) protein, C-terminal domain, coronavirus	Domain
K, L [auth P], M [auth L], N [auth M], O, K, L [auth P], M [auth L], N [auth M], O, P [auth Q], Q [auth N]	IPR043505	Nucleocapsid protein, betacoronavirus	Family
K, L [auth P], M [auth L], N [auth M], O, K, L [auth P], M [auth L], N [auth M], O, P [auth Q], Q [auth N]	IPR001218	Nucleocapsid protein, coronavirus	Family
K, L [auth P], M [auth L], N [auth M], O, K, L [auth P], M [auth L], N [auth M], O, P [auth Q], Q [auth N]	IPR037195	Nucleocapsid protein, N-terminal	Homologous Superfamily
K, L [auth P], M [auth L], N [auth M], O, K, L [auth P], M [auth L], N [auth M], O, P [auth Q], Q [auth N]	IPR037179	Nucleocapsid protein, C-terminal	Homologous Superfamily
K, L [auth P], M [auth L], N [auth M], O, K, L [auth P], M [auth L], N [auth M], O, P [auth Q], Q [auth N]	IPR044345	Nucleocapsid (N) protein, N-terminal domain, coronavirus	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Pharos: Q13283	Sjogren syndrome astrocytic tumor exocrine pancreatic carcinoma glioblastoma large cell medulloblastoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia tuberculosis atypical teratoid rhabdoid tumor gastric cancer hepatocellular carcinoma lung adenocarcinoma medulloblastoma ovarian cancer Sjogren syndrome astrocytic tumor exocrine pancreatic carcinoma glioblastoma large cell medulloblastoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia tuberculosis atypical teratoid rhabdoid tumor gastric cancer hepatocellular carcinoma lung adenocarcinoma medulloblastoma ovarian cancer psoriasis ulcerative colitis breast cancer gastric carcinoma IgA glomerulonephritis lymphoplasmacytic lymphoma myopathy pancreatic intraductal papillary-mucinous carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.