8TEP

Human cytomegalovirus portal vertex, virion configuration 1 (VC1)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D	PF04523	Herpes virus tegument protein U30 (Herpes_U30)	Herpes virus tegument protein U30	-	Family
H, I, J, K, L H, I, J, K, L, M	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
E, F	PF01499	Herpesvirus UL25 family (Herpes_UL25)	Herpesvirus UL25 family	-	Family
G	PF04559	Herpesvirus UL17 protein (Herpes_UL17)	Herpesvirus UL17 protein	-	Family
T, W	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
U, V, X, Y	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	Large tegument protein deneddylase	cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity cysteine-type deubiquitinase activity catalytic activity, acting on a protein hydrolase activity catalytic activity deubiquitinase activity	proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host ubiquitin-like protein modification symbiont-mediated perturbation of host process cellular process modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell cytoplasm virion component viral tegument
B, D	Inner tegument protein	-	virion assembly viral process viral life cycle	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell cytoplasm host cell Golgi apparatus host cell cytoplasm part virion component viral tegument
H, I, J, K, L H, I, J, K, L, M	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
N, O, P, Q, R N, O, P, Q, R, S	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
E, F	Capsid vertex component 2	-	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging viral penetration into host nucleus intracellular transport of virus transport of virus biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction	host cellular component host cell cellular anatomical entity viral capsid virion component host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle
G	Capsid vertex component 1	-	cellular component organization organelle organization chromosome organization cellular process cellular component organization or biogenesis virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
T, W	Triplex capsid protein 1	DNA binding binding organic cyclic compound binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
U, V, X, Y	Triplex capsid protein 2	structural molecule activity	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
Z	Large structural phosphoprotein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell perinuclear region of cytoplasm host cell cytoplasm host cell cytoplasm part cytoplasmic viral factory host cell viral assembly compartment viral factory host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell perinuclear region of cytoplasm host cell cytoplasm host cell cytoplasm part cytoplasmic viral factory host cell viral assembly compartment viral factory host cell cytoplasmic vesicle virion component viral tegument

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, C	IPR006928	Herpesvirus large tegument protein, USP domain	Domain
A, C	IPR034702	Large tegument protein deneddylase	Family
B, D	IPR007611	Herpesvirus tegument protein U30	Family
B, D	IPR034738	Inner tegument protein	Family
H, I, J, K, L H, I, J, K, L, M	IPR000912	Herpesvirus major capsid protein	Family
H, I, J, K, L H, I, J, K, L, M	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
N, O, P, Q, R N, O, P, Q, R, S	IPR031385	Small capsid protein, Herpesviridae	Family
E, F	IPR002493	Herpesvirus UL25	Family
G	IPR007640	Herpesvirus capsid vertex component 1	Family
T, W	IPR004999	Herpesvirus capsid shell protein 1	Family
U, V, X, Y	IPR002690	Herpesvirus capsid protein 2	Family
Z	IPR010340	Herpesvirus UL11/UL32	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.