8TB9

PRC2-J119-450 monomer bound to H1-nucleosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyWinged helix DNA-binding domain 8094387 3000034 SCOP2B (2022-06-29)
J [auth R]SCOP2B SuperfamilyCore histone-like 8041278 3001387 SCOP2B (2022-06-29)
M [auth U]SCOP2B SuperfamilyCore histone-like 8041278 3001387 SCOP2B (2022-06-29)
K [auth S]SCOP2B SuperfamilyCore histone-like 8041279 3001387 SCOP2B (2022-06-29)
N [auth V]SCOP2B SuperfamilyCore histone-like 8041279 3001387 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyVEFS box-like 8090819 3002459 SCOP2B (2022-06-29)
G [auth I]SCOP2B SuperfamilyCore histone-like 8041272 3001387 SCOP2B (2022-06-29)
O [auth W]SCOP2B SuperfamilyCore histone-like 8041272 3001387 SCOP2B (2022-06-29)
H [auth J]SCOP2B SuperfamilyCore histone-like 8042439 3001387 SCOP2B (2022-06-29)
P [auth X]SCOP2B SuperfamilyCore histone-like 8042439 3001387 SCOP2B (2022-06-29)
I [auth O]SCOP2B SuperfamilyWD40 repeat-like 8053350 3001694 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00538linker histone H1 and H5 family (Linker_histone)linker histone H1 and H5 familyLinker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.Domain
J [auth R],
M [auth U]
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
C [auth D]PF09733VEFS-Box of polycomb protein (VEFS-Box)VEFS-Box of polycomb protein- Family
D [auth E]PF18264CXC domain (preSET_CXC)CXC domainThis domain is found to the N-terminus of the SET domain in the EZH2 protein [1]. It is a zinc binding domain.Domain
D [auth E]PF00856SET domain (SET)SET domain- Family
D [auth E]PF18118Polycomb repressive complex 2 tri-helical domain (PRC2_HTH_1)Polycomb repressive complex 2 tri-helical domainThis domain can be found in the Polycomb repressive complex 2 (PRC2) present in Homo sapiens. Polycomb complexes maintain repressive chromatin states by silencing gene expression. PRC2 does this by methylating lysine 27 of histone H3. This domain mak ...This domain can be found in the Polycomb repressive complex 2 (PRC2) present in Homo sapiens. Polycomb complexes maintain repressive chromatin states by silencing gene expression. PRC2 does this by methylating lysine 27 of histone H3. This domain makes up part of the N-lobe which is involved in regulation [1].
Domain
D [auth E]PF11616WD repeat binding protein EZH2 (EZH2_WD-Binding)WD repeat binding protein EZH2- Family
D [auth E]PF21358Ezh2, MCSS domain (Ezh2_MCSS)Ezh2, MCSS domainThis entry represents the MCSS domain found in the middle region of the Histone-lysine N-methyltransferase EZH2 [1-5]. It makes contacts with the adjacent SANT domain and the Vefs domain from EED. Additionally, this domain contains a zinc-binding mot ...This entry represents the MCSS domain found in the middle region of the Histone-lysine N-methyltransferase EZH2 [1-5]. It makes contacts with the adjacent SANT domain and the Vefs domain from EED. Additionally, this domain contains a zinc-binding motif and contributes two cysteine residues for a second one, formed with two cysteines from the SANT domain [2].
Domain
E [auth G]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
H [auth J],
P [auth X]
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
I [auth O]PF12265Histone-binding protein RBBP4 or subunit C of CAF1 complex (CAF1C_H4-bd)Histone-binding protein RBBP4 or subunit C of CAF1 complex- Repeat
I [auth O]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Histone H1.0
J [auth R],
M [auth U]
Histone H2A type 1 -
K [auth S],
N [auth V]
Histone H2B 1.1 -
L [auth T]DNA (226-MER)---
Q [auth Y]Zinc finger protein AEBP2
Protein Jumonji
C [auth D]Polycomb protein SUZ12
D [auth E]Histone-lysine N-methyltransferase EZH2
E [auth G]Polycomb protein EED
F [auth H]DNA (226-MER)---
G [auth I],
O [auth W]
Histone H3.2 -
H [auth J],
P [auth X]
Histone H4
I [auth O]Histone-binding protein RBBP4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR005818Linker histone H1/H5, domain H15Domain
IPR005819Linker histone H1/H5Family
J [auth R],
M [auth U]
IPR009072Histone-foldHomologous Superfamily
J [auth R],
M [auth U]
IPR007125Histone H2A/H2B/H3Domain
J [auth R],
M [auth U]
IPR002119Histone H2AFamily
J [auth R],
M [auth U]
IPR032454Histone H2A, C-terminal domainDomain
J [auth R],
M [auth U]
IPR032458Histone H2A conserved siteConserved Site
K [auth S],
N [auth V]
IPR009072Histone-foldHomologous Superfamily
K [auth S],
N [auth V]
IPR007125Histone H2A/H2B/H3Domain
K [auth S],
N [auth V]
IPR000558Histone H2BFamily
Q [auth Y]IPR013087Zinc finger C2H2-typeDomain
Q [auth Y]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
Q [auth Y]IPR052130AEBP2/jing C2H2-type zinc-fingerFamily
IPR003347JmjC domainDomain
IPR003349JmjN domainDomain
IPR001606ARID DNA-binding domainDomain
IPR004198Zinc finger, C5HC2-typeDomain
IPR036431ARID DNA-binding domain superfamilyHomologous Superfamily
C [auth D]IPR019135Polycomb protein, VEFS-BoxDomain
D [auth E]IPR048358EZH1/2, MCSS domainDomain
D [auth E]IPR041343Polycomb repressive complex 2 subunit EZH1/EZH2, tri-helical domainDomain
D [auth E]IPR046341SET domain superfamilyHomologous Superfamily
D [auth E]IPR001214SET domainDomain
D [auth E]IPR045318Histone-lysine N-methyltransferase EZH1/2-likeFamily
D [auth E]IPR033467Tesmin/TSO1-like CXC domainDomain
D [auth E]IPR044439EZH2, SET domainDomain
D [auth E]IPR026489CXC domainDomain
D [auth E]IPR041355Pre-SET CXC domainDomain
D [auth E]IPR001005SANT/Myb domainDomain
D [auth E]IPR021654Histone-lysine N-methyltransferase EZH1/EZH2Family
E [auth G]IPR019775WD40 repeat, conserved siteConserved Site
E [auth G]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth G]IPR001680WD40 repeatRepeat
E [auth G]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth G]IPR051243Polycomb group WD repeat-containing proteinFamily
G [auth I],
O [auth W]
IPR009072Histone-foldHomologous Superfamily
G [auth I],
O [auth W]
IPR007125Histone H2A/H2B/H3Domain
G [auth I],
O [auth W]
IPR000164Histone H3/CENP-AFamily
H [auth J],
P [auth X]
IPR009072Histone-foldHomologous Superfamily
H [auth J],
P [auth X]
IPR001951Histone H4Family
H [auth J],
P [auth X]
IPR035425CENP-T/Histone H4, histone foldDomain
H [auth J],
P [auth X]
IPR019809Histone H4, conserved siteConserved Site
H [auth J],
P [auth X]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
I [auth O]IPR050459WD repeat RBAP46/RBAP48/MSI1Family
I [auth O]IPR019775WD40 repeat, conserved siteConserved Site
I [auth O]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
I [auth O]IPR022052Histone-binding protein RBBP4, N-terminalDomain
I [auth O]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
I [auth O]IPR001680WD40 repeatRepeat
I [auth O]IPR020472G-protein beta WD-40 repeatRepeat

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP07305
Q [auth Y]PharosQ6ZN18
PharosQ92833
C [auth D]PharosQ15022
D [auth E]PharosQ15910
E [auth G]PharosO75530
I [auth O]PharosQ09028