8SB1
CryoEM structure of DH270.I3-CH848.10.17
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e8sb1A2 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e8sb1A1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e8sb1A3 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth F] | F_UNCLASSIFIED | e8sb1F1 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth F] | F_UNCLASSIFIED | e8sb1F2 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth F] | F_UNCLASSIFIED | e8sb1F3 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth K] | F_UNCLASSIFIED | e8sb1K3 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth K] | F_UNCLASSIFIED | e8sb1K2 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth K] | F_UNCLASSIFIED | e8sb1K1 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e8sb1B1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth G] | F_UNCLASSIFIED | e8sb1G1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth L] | F_UNCLASSIFIED | e8sb1L1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: F_UNCLASSIFIED | ECOD (1.6) |
C | F_UNCLASSIFIED | e8sb1C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth H] | F_UNCLASSIFIED | e8sb1H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth M] | F_UNCLASSIFIED | e8sb1M1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D | F_UNCLASSIFIED | e8sb1D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth I] | F_UNCLASSIFIED | e8sb1I1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
L [auth N] | F_UNCLASSIFIED | e8sb1N1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C, G [auth H], K [auth M] | Heavy Chain | IGHV1 | - | ch848.10.17 gp120 | SAbDab (2024-10-11) |
D, H [auth I], L [auth N] | Light Chain | IGLV2 | Lambda | ch848.10.17 gp120 | SAbDab (2024-10-11) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, E [auth F], I [auth K] | IPR000777 | Human immunodeficiency virus 1, envelope glycoprotein Gp120 | Domain |
A, E [auth F], I [auth K] | IPR036377 | Gp120 core superfamily | Homologous Superfamily |
A, E [auth F], I [auth K] | IPR000328 | Retroviral envelope protein GP41-like | Domain |
A, E [auth F], I [auth K] | IPR037527 | Envelope glycoprotein Gp160 | Family |