Annotations: 8S41

The structure of the copia retrotransposon icosahedral capsid (T=9)

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth a]		e8s41a1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: Hypothetical protein YqbG-like	F:	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth F], C [auth G], D [auth L], E [auth Q], A, B [auth F], C [auth G], D [auth L], E [auth Q], F [auth V], G [auth X], H [auth a], I [auth d]	Copia VLP protein	binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process DNA biosynthetic process cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process DNA biosynthetic process cellular response to stimulus response to stimulus cellular response to stress DNA damage response response to stress DNA repair DNA integration	transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex transferase complex DNA polymerase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth F], C [auth G], D [auth L], E [auth Q], A, B [auth F], C [auth G], D [auth L], E [auth Q], F [auth V], G [auth X], H [auth a], I [auth d]	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
A, B [auth F], C [auth G], D [auth L], E [auth Q], A, B [auth F], C [auth G], D [auth L], E [auth Q], F [auth V], G [auth X], H [auth a], I [auth d]	IPR036875	Zinc finger, CCHC-type superfamily	Homologous Superfamily
A, B [auth F], C [auth G], D [auth L], E [auth Q], A, B [auth F], C [auth G], D [auth L], E [auth Q], F [auth V], G [auth X], H [auth a], I [auth d]	IPR001584	Integrase, catalytic core	Domain
A, B [auth F], C [auth G], D [auth L], E [auth Q], A, B [auth F], C [auth G], D [auth L], E [auth Q], F [auth V], G [auth X], H [auth a], I [auth d]	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A, B [auth F], C [auth G], D [auth L], E [auth Q], A, B [auth F], C [auth G], D [auth L], E [auth Q], F [auth V], G [auth X], H [auth a], I [auth d]	IPR057670	Retroviral polymerase, SH3-like domain	Domain
A, B [auth F], C [auth G], D [auth L], E [auth Q], A, B [auth F], C [auth G], D [auth L], E [auth Q], F [auth V], G [auth X], H [auth a], I [auth d]	IPR039537	Retrotransposon Ty1/copia-like	Family
A, B [auth F], C [auth G], D [auth L], E [auth Q], A, B [auth F], C [auth G], D [auth L], E [auth Q], F [auth V], G [auth X], H [auth a], I [auth d]	IPR001878	Zinc finger, CCHC-type	Domain
A, B [auth F], C [auth G], D [auth L], E [auth Q], A, B [auth F], C [auth G], D [auth L], E [auth Q], F [auth V], G [auth X], H [auth a], I [auth d]	IPR061502	Copia/RE1/RE2-like, N-terminal domain	Domain
A, B [auth F], C [auth G], D [auth L], E [auth Q], A, B [auth F], C [auth G], D [auth L], E [auth Q], F [auth V], G [auth X], H [auth a], I [auth d]	IPR054722	Retrovirus-related Pol polyprotein from transposon TNT 1-94-like, beta-barrel domain	Domain
A, B [auth F], C [auth G], D [auth L], E [auth Q], A, B [auth F], C [auth G], D [auth L], E [auth Q], F [auth V], G [auth X], H [auth a], I [auth d]	IPR025724	GAG-pre-integrase domain	Domain
A, B [auth F], C [auth G], D [auth L], E [auth Q], A, B [auth F], C [auth G], D [auth L], E [auth Q], F [auth V], G [auth X], H [auth a], I [auth d]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
A, B [auth F], C [auth G], D [auth L], E [auth Q], A, B [auth F], C [auth G], D [auth L], E [auth Q], F [auth V], G [auth X], H [auth a], I [auth d]	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	Domain