Annotations: 8S3E

Structure of rabbit Slo1 in complex with gamma1/LRRC26

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Rap1-DNA-bind	e8s3eH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
G	Rap1-DNA-bind	e8s3eG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
F	Rap1-DNA-bind	e8s3eF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
E	CACHD1_middle	e8s3eE01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: CACHD1_middle	ECOD (v295.2)
D	Rap1-DNA-bind	e8s3eD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
C	Rap1-DNA-bind	e8s3eC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
B	Rap1-DNA-bind	e8s3eB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
A	CACHD1_middle	e8s3eA01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: CACHD1_middle	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF21014	Ca2+-activated K+ channel Slowpoke, TrkA_C like domain (Slowpoke_C)	Ca2+-activated K+ channel Slowpoke, TrkA_C like domain	This domain is found at the cytoplasmic C-terminus of the drosophila slowpoke K+ channel. It is related to the TrkA C-terminal domain Pfam:PF02080.	Domain
A, B, C, D	PF03493	Calcium-activated BK potassium channel alpha subunit (BK_channel_a)	Calcium-activated BK potassium channel alpha subunit	-	Family
A, B, C, D	PF00520	Ion transport protein (Ion_trans)	Ion transport protein	-	Family
A, B, C, D	PF22614	Calcium-activated potassium channel slowpoke-like RCK domain (Slo-like_RCK)	Calcium-activated potassium channel slowpoke-like RCK domain	This entry includes calcium-activated potassium channels, known as BK channels or Slowpoke homologues (Slo1-3) which includes calcium-activated potassium channel slowpoke from Drosophila (Slo) and its homologues from vertebrates KCMA1, KCNT1/2 and KC ...	This entry includes calcium-activated potassium channels, known as BK channels or Slowpoke homologues (Slo1-3) which includes calcium-activated potassium channel slowpoke from Drosophila (Slo) and its homologues from vertebrates KCMA1, KCNT1/2 and KCNU1. This entry represents the C-terminal regulator of K+ conductance (RCK) domains which appear as tandem domains in these proteins [1-5]. The RCK domain has a Rossmann-fold topology with unique positions that compose a well-conserved salt bridge and a hydrophobic dimer interface. This domain is also presents in prokaryotic K+ channels.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, G, H	Leucine-rich repeat-containing protein 26	protein binding binding transmembrane transporter binding monoatomic cation transmembrane transporter activity gated channel activity monoatomic ion channel activity potassium ion transmembrane transporter activity voltage-gated channel activity voltage-gated monoatomic ion channel activity potassium channel activity voltage-gated monoatomic cation channel activity monoatomic cation channel activity passive transmembrane transporter activity voltage-gated potassium channel activity protein binding binding transmembrane transporter binding monoatomic cation transmembrane transporter activity gated channel activity monoatomic ion channel activity potassium ion transmembrane transporter activity voltage-gated channel activity voltage-gated monoatomic ion channel activity potassium channel activity voltage-gated monoatomic cation channel activity monoatomic cation channel activity passive transmembrane transporter activity voltage-gated potassium channel activity channel activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity potassium channel regulator activity transporter activator activity channel regulator activity potassium channel activator activity molecular function activator activity ion channel regulator activity molecular function regulator activity channel activator activity transporter regulator activity	-	voltage-gated potassium channel complex protein-containing complex plasma membrane protein complex membrane plasma membrane potassium channel complex membrane protein complex cation channel complex transporter complex cell periphery cellular anatomical structure transmembrane transporter complex monoatomic ion channel complex
A, B, C, D	Calcium-activated potassium channel subunit alpha-1	monoatomic cation transmembrane transporter activity calcium-activated cation channel activity gated channel activity monoatomic ion channel activity potassium ion transmembrane transporter activity potassium channel activity monoatomic ion-gated channel activity calcium-activated potassium channel activity ligand-gated channel activity ligand-gated monoatomic ion channel activity large conductance calcium-activated potassium channel activity monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity monoatomic cation transmembrane transporter activity calcium-activated cation channel activity gated channel activity monoatomic ion channel activity potassium ion transmembrane transporter activity potassium channel activity monoatomic ion-gated channel activity calcium-activated potassium channel activity ligand-gated channel activity ligand-gated monoatomic ion channel activity large conductance calcium-activated potassium channel activity monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity ligand-gated monoatomic cation channel activity metal ion transmembrane transporter activity transmembrane transporter activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity voltage-gated potassium channel activity cation binding ion binding binding metal ion binding small molecule binding	-	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane protein-containing complex transmembrane transporter complex membrane protein complex transporter complex cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane protein-containing complex transmembrane transporter complex membrane protein complex transporter complex monoatomic ion channel complex membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, G, H	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
E, F, G, H	IPR000483	Cysteine-rich flanking region, C-terminal	Domain
E, F, G, H	IPR001611	Leucine-rich repeat	Repeat
E, F, G, H	IPR051432	Voltage and calcium-activated potassium channel auxiliary protein	Family
E, F, G, H	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A, B, C, D	IPR005821	Ion transport domain	Domain
A, B, C, D	IPR047871	Calcium-activated potassium channel slowpoke-like	Family
A, B, C, D	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR003148	Regulator of K+ conductance, N-terminal lobe	Domain
A, B, C, D	IPR003929	Calcium-activated potassium channel BK, alpha subunit	Domain
A, B, C, D	IPR048735	Ca2+-activated K+ channel Slowpoke-like, C-terminal domain	Domain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H	MemProtMD	Annotated as membrane protein by MemProtMD

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.