8QRL

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF14955Mitochondrial ribosome subunit S24 (MRP-S24)Mitochondrial ribosome subunit S24- Family
PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
PF21251Small ribosomal subunit protein uS5m, N-terminal (Ribosomal_uS5m_N)Small ribosomal subunit protein uS5m, N-terminalThis entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the m ...This entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the mRNA channel entrance [2].
Domain
PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
PF10245Mitochondrial 28S ribosomal protein S22 (MRP-S22)Mitochondrial 28S ribosomal protein S22- Family
PF10484Mitochondrial ribosomal protein S23 (MRP-S23)Mitochondrial ribosomal protein S23- Family
PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
PF14943Mitochondrial ribosome subunit S26 (MRP-S26)Mitochondrial ribosome subunit S26- Family
PF10236Mitochondrial ribosomal death-associated protein 3 (DAP3)Mitochondrial ribosomal death-associated protein 3- Family
PF08293Mitochondrial ribosomal subunit S27 (MRP-S33)Mitochondrial ribosomal subunit S27- Family
AA [auth 0]PF16053Mitochondrial 28S ribosomal protein S34 (MRP-S34)Mitochondrial 28S ribosomal protein S34- Family
BA [auth 1]PF10213Mitochondrial ribosomal subunit protein (MRP-S28)Mitochondrial ribosomal subunit protein- Family
DA [auth 4]PF13812Pentatricopeptide repeat domain (PPR_3)Pentatricopeptide repeat domain- Repeat
DA [auth 4]PF22330Small ribosomal subunit protein mS39, PPR (Rib_mS39_PPR)Small ribosomal subunit protein mS39, PPR- Repeat
PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
28S ribosomal protein S24, mitochondrial
28S ribosomal protein S5, mitochondrial
28S ribosomal protein S16, mitochondrial
28S ribosomal protein S17, mitochondrial
28S ribosomal protein S18b, mitochondrial
28S ribosomal protein S25, mitochondrial
28S ribosomal protein S27, mitochondrial
12S mitochondrial rRNA---
28S ribosomal protein S12, mitochondrial
28S ribosomal protein S14, mitochondrial
28S ribosomal protein S15, mitochondrial
28S ribosomal protein S18c, mitochondrial
28S ribosomal protein S21, mitochondrial
28S ribosomal protein S22, mitochondrial
28S ribosomal protein S23, mitochondrial
28S ribosomal protein S2, mitochondrial
28S ribosomal protein S26, mitochondrial
28S ribosomal protein S28, mitochondrial
28S ribosomal protein S29, mitochondrial
28S ribosomal protein S31, mitochondrial
28S ribosomal protein S33, mitochondrial
AA [auth 0]28S ribosomal protein S34, mitochondrial
BA [auth 1]28S ribosomal protein S35, mitochondrial
CA [auth 3]Aurora kinase A-interacting protein-
DA [auth 4]Pentatricopeptide repeat domain-containing protein 3, mitochondrial
EA [auth 8]12S rRNA N4-methylcytidine (m4C) methyltransferase
28S ribosomal protein S6, mitochondrial
28S ribosomal protein S7, mitochondrial
28S ribosomal protein S9, mitochondrial
28S ribosomal protein S10, mitochondrial-
28S ribosomal protein S11, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
IPR000851Small ribosomal subunit protein uS5Family
IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
IPR000307Small ribosomal subunit protein bS16Family
IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR000266Small ribosomal subunit protein uS17Family
IPR040054Small ribosomal subunit protein mS40Family
IPR001648Small ribosomal subunit protein bS18Family
IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
IPR036249Thioredoxin-like superfamilyHomologous Superfamily
IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR002885Pentatricopeptide repeatRepeat
IPR019266Small ribosomal subunit protein mS27Family
IPR034913mS27/PTCD2Family
IPR006032Small ribosomal subunit protein uS12Family
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR005679Ribosomal protein uS12, bacterial-typeFamily
IPR001209Small ribosomal subunit protein uS14Family
IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
IPR000589Small ribosomal subunit protein uS15Family
IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
IPR001648Small ribosomal subunit protein bS18Family
IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
IPR001911Small ribosomal subunit protein bS21Family
IPR019374Small ribosomal subunit protein mS22Family
IPR023611Small ribosomal subunit protein mS23, conserved domainDomain
IPR019520Small ribosomal subunit protein mS23, metazoaFamily
IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
IPR001865Small ribosomal subunit protein uS2Family
IPR026140Small ribosomal subunit protein mS26Family
IPR019375Small ribosomal subunit protein bS1mFamily
IPR008092Small ribosomal subunit protein mS29, metazoan-typeFamily
IPR019368Small ribosomal subunit protein mS29Family
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR026299Mitochondrial 28S ribosomal protein S31Family
IPR013219Small ribosomal subunit protein mS33Family
AA [auth 0]IPR032053Small ribosomal subunit protein mS34Family
BA [auth 1]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
BA [auth 1]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
CA [auth 3]IPR013177Ribosomal protein mS38, C-terminalDomain
DA [auth 4]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
DA [auth 4]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
DA [auth 4]IPR002885Pentatricopeptide repeatRepeat
EA [auth 8]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
EA [auth 8]IPR002903Ribosomal RNA small subunit methyltransferase HFamily
EA [auth 8]IPR023397S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamilyHomologous Superfamily
IPR000529Small ribosomal subunit protein bS6Family
IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
IPR000235Small ribosomal subunit protein uS7Family
IPR023798Small ribosomal subunit protein uS7 domainDomain
IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR000754Small ribosomal subunit protein uS9Family
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR027486Small ribosomal subunit protein uS10 domainDomain
IPR040055Small ribosomal subunit protein uS10mFamily
IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
IPR001971Small ribosomal subunit protein uS11Family
IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP82675
PharosQ9Y3D3
PharosQ9Y2R5
PharosQ9Y676
PharosP82663
PharosQ92552
PharosO15235
PharosO60783
PharosP82914
PharosQ9Y3D5
PharosP82921
PharosP82650
PharosQ9Y3D9
PharosQ9Y399
PharosQ9Y2Q9
PharosP51398
PharosQ92665
PharosQ9Y291
AA [auth 0]PharosP82930
BA [auth 1]PharosP82673
CA [auth 3]PharosQ9NWT8
DA [auth 4]PharosQ96EY7
EA [auth 8]PharosA6NJ78
PharosP82932
PharosQ9Y2R9
PharosP82933
PharosP82664
PharosP82912