8QQD | pdb_00008qqd

CryoEM structure of the type IV pilin PilA4 from Thermus thermophilus

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z	DNA_topoisoIV	e8qqdZ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
Y	DNA_topoisoIV	e8qqdY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
X	DNA_topoisoIV	e8qqdX1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
W	DNA_topoisoIV	e8qqdW1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
V	DNA_topoisoIV	e8qqdV1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
U	DNA_topoisoIV	e8qqdU1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
T	DNA_topoisoIV	e8qqdT1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
SA [auth s]	DNA_topoisoIV	e8qqds1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
S	DNA_topoisoIV	e8qqdS1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
RA [auth r]	DNA_topoisoIV	e8qqdr1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
R	DNA_topoisoIV	e8qqdR1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
QA [auth q]	DNA_topoisoIV	e8qqdq1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
Q	DNA_topoisoIV	e8qqdQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
PA [auth p]	DNA_topoisoIV	e8qqdp1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
P	DNA_topoisoIV	e8qqdP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
OA [auth o]	DNA_topoisoIV	e8qqdo1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
O	DNA_topoisoIV	e8qqdO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
NA [auth n]	DNA_topoisoIV	e8qqdn1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
N	DNA_topoisoIV	e8qqdN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
MA [auth m]	DNA_topoisoIV	e8qqdm1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
M	DNA_topoisoIV	e8qqdM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
LA [auth l]	DNA_topoisoIV	e8qqdl1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
L	DNA_topoisoIV	e8qqdL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
KA [auth k]	DNA_topoisoIV	e8qqdk1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
K	DNA_topoisoIV	e8qqdK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
JA [auth j]	DNA_topoisoIV	e8qqdj1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
J	DNA_topoisoIV	e8qqdJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
IA [auth i]	DNA_topoisoIV	e8qqdi1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
I	DNA_topoisoIV	e8qqdI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
HA [auth h]	DNA_topoisoIV	e8qqdh1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
H	DNA_topoisoIV	e8qqdH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
GA [auth g]	DNA_topoisoIV	e8qqdg1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
G	DNA_topoisoIV	e8qqdG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
FA [auth f]	DNA_topoisoIV	e8qqdf1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
F	DNA_topoisoIV	e8qqdF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
EA [auth e]	DNA_topoisoIV	e8qqde1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
E	DNA_topoisoIV	e8qqdE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
DA [auth d]	DNA_topoisoIV	e8qqdd1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
D	DNA_topoisoIV	e8qqdD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
CA [auth c]	DNA_topoisoIV	e8qqdc1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
C	DNA_topoisoIV	e8qqdC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
BA [auth b]	DNA_topoisoIV	e8qqdb1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
B	DNA_topoisoIV	e8qqdB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
AA [auth a]	DNA_topoisoIV	e8qqda1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)
A	DNA_topoisoIV	e8qqdA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: DNA_topoisoIV	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, U, V, W, X, Y, Z	PilA	-	protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane extracellular region periplasmic space protein-containing complex type II protein secretion system complex cell outer membrane external encapsulating structure cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, U, V, W, X, Y, Z	IPR000983	General secretion pathway protein G-type pilin	Family
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, U, V, W, X, Y, Z	IPR012902	Prokaryotic N-terminal methylation site	PTM
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, U, V, W, X, Y, Z	IPR045584	Pilin-like	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.