8QJ0

Room-temperature Serial Synchrotron Crystallography structure of Spinacia oleracea RuBisCO

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth S]	SCOP2B Superfamily	RuBisCO, small subunit	8069965	3001622	SCOP2B (2022-06-29)
B [auth T]	SCOP2B Superfamily	RuBisCO, small subunit	8069965	3001622	SCOP2B (2022-06-29)
C [auth U]	SCOP2B Superfamily	RuBisCO, small subunit	8069965	3001622	SCOP2B (2022-06-29)
D [auth V]	SCOP2B Superfamily	RuBisCO, small subunit	8069965	3001622	SCOP2B (2022-06-29)
E [auth L]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035405	3001258	SCOP2B (2022-06-29)
E [auth L]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043674	3000552	SCOP2B (2022-06-29)
F [auth M]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035405	3001258	SCOP2B (2022-06-29)
F [auth M]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043674	3000552	SCOP2B (2022-06-29)
G [auth N]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043674	3000552	SCOP2B (2022-06-29)
G [auth N]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035405	3001258	SCOP2B (2022-06-29)
H [auth O]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043674	3000552	SCOP2B (2022-06-29)
H [auth O]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035405	3001258	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth S], B [auth T], C [auth U], D [auth V]	PF00101	Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)	Ribulose bisphosphate carboxylase, small chain	-	Domain
E [auth L], F [auth M], G [auth N], H [auth O]	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)	Ribulose bisphosphate carboxylase large chain, N-terminal domain	The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.	Domain
E [auth L], F [auth M], G [auth N], H [auth O]	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)	Ribulose bisphosphate carboxylase large chain, catalytic domain	The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth S], B [auth T], C [auth U], D [auth V]	Ribulose bisphosphate carboxylase small subunit, chloroplastic 2	ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	cellular metabolic process metabolic process cellular process cellular metabolic compound salvage photorespiration carbohydrate metabolic process photosynthesis carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process biosynthetic process reductive pentose-phosphate cycle carbon fixation	membrane-bounded organelle intracellular organelle intracellular anatomical structure plastid organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle chloroplast
E [auth L], F [auth M], G [auth N], H [auth O]	Ribulose bisphosphate carboxylase large chain	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity monooxygenase activity oxidoreductase activity	cellular metabolic process metabolic process cellular process cellular metabolic compound salvage photorespiration carbohydrate metabolic process photosynthesis carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process biosynthetic process reductive pentose-phosphate cycle carbon fixation	membrane-bounded organelle intracellular organelle intracellular anatomical structure plastid organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth S], B [auth T], C [auth U], D [auth V]	IPR024680	Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal	Domain
A [auth S], B [auth T], C [auth U], D [auth V]	IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	Homologous Superfamily
A [auth S], B [auth T], C [auth U], D [auth V]	IPR024681	Ribulose bisphosphate carboxylase, small subunit	Family
A [auth S], B [auth T], C [auth U], D [auth V]	IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	Domain
E [auth L], F [auth M], G [auth N], H [auth O]	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
E [auth L], F [auth M], G [auth N], H [auth O]	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
E [auth L], F [auth M], G [auth N], H [auth O]	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
E [auth L], F [auth M], G [auth N], H [auth O]	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
E [auth L], F [auth M], G [auth N], H [auth O]	IPR033966	RuBisCO	Family
E [auth L], F [auth M], G [auth N], H [auth O]	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain
E [auth L], F [auth M], G [auth N], H [auth O]	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.