8QJ0

Room-temperature Serial Synchrotron Crystallography structure of Spinacia oleracea RuBisCO

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth S]	SCOP2B Superfamily	RuBisCO, small subunit	8069965	3001622	SCOP2B (2022-06-29)
B [auth T]	SCOP2B Superfamily	RuBisCO, small subunit	8069965	3001622	SCOP2B (2022-06-29)
C [auth U]	SCOP2B Superfamily	RuBisCO, small subunit	8069965	3001622	SCOP2B (2022-06-29)
D [auth V]	SCOP2B Superfamily	RuBisCO, small subunit	8069965	3001622	SCOP2B (2022-06-29)
E [auth L]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035405	3001258	SCOP2B (2022-06-29)
E [auth L]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043674	3000552	SCOP2B (2022-06-29)
F [auth M]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035405	3001258	SCOP2B (2022-06-29)
F [auth M]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043674	3000552	SCOP2B (2022-06-29)
G [auth N]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043674	3000552	SCOP2B (2022-06-29)
G [auth N]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035405	3001258	SCOP2B (2022-06-29)
H [auth O]	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043674	3000552	SCOP2B (2022-06-29)
H [auth O]	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035405	3001258	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth S], B [auth T], C [auth U], D [auth V]	PF00101	Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)	Ribulose bisphosphate carboxylase, small chain	-	Domain
E [auth L], F [auth M], G [auth N], H [auth O]	PF02788	Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)	Ribulose bisphosphate carboxylase large chain, N-terminal domain	The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.	Domain
E [auth L], F [auth M], G [auth N], H [auth O]	PF00016	Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)	Ribulose bisphosphate carboxylase large chain, catalytic domain	The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth S], B [auth T], C [auth U], D [auth V]	Ribulose bisphosphate carboxylase small subunit, chloroplastic 2	ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	metabolic process cellular process cellular metabolic compound salvage photorespiration carbohydrate metabolic process biosynthetic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process carbon fixation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
E [auth L], F [auth M], G [auth N], H [auth O]	Ribulose bisphosphate carboxylase large chain	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity monooxygenase activity oxidoreductase activity	metabolic process cellular process cellular metabolic compound salvage photorespiration carbohydrate metabolic process biosynthetic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process carbon fixation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth S], B [auth T], C [auth U], D [auth V]	IPR024680	Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal	Domain
A [auth S], B [auth T], C [auth U], D [auth V]	IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	Homologous Superfamily
A [auth S], B [auth T], C [auth U], D [auth V]	IPR024681	Ribulose bisphosphate carboxylase, small subunit	Family
A [auth S], B [auth T], C [auth U], D [auth V]	IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	Domain
E [auth L], F [auth M], G [auth N], H [auth O]	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
E [auth L], F [auth M], G [auth N], H [auth O]	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
E [auth L], F [auth M], G [auth N], H [auth O]	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
E [auth L], F [auth M], G [auth N], H [auth O]	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
E [auth L], F [auth M], G [auth N], H [auth O]	IPR033966	RuBisCO	Family
E [auth L], F [auth M], G [auth N], H [auth O]	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain
E [auth L], F [auth M], G [auth N], H [auth O]	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.