8OZN

In situ cryoEM structure of the Prototype Foamy Virus capsid, hexamer 2 localised reconstruction

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M]	PF20672	Spumavirus Gag polyprotein, conserved central domain (Gag_FV_central)	Spumavirus Gag polyprotein, conserved central domain	This is the conserved central domain of the Gag polyprotein from Foamyviruses (FVs) or Spuma-retroviruses. Gag is the major structural protein required for genome packaging virion assembly, trafficking and egress. This domain has an all alpha-helical ...	This is the conserved central domain of the Gag polyprotein from Foamyviruses (FVs) or Spuma-retroviruses. Gag is the major structural protein required for genome packaging virion assembly, trafficking and egress. This domain has an all alpha-helical fold and contains the highly conserved PGQA and YxxLGL sequences [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M]	Gag polyprotein	DNA binding binding organic cyclic compound binding nucleic acid binding RNA binding	exit from host cell biological process involved in interspecies interaction between organisms viral process viral release from host cell viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host microtubule-dependent intracellular transport of viral material microtubule-dependent intracellular transport of viral material towards nucleus intracellular transport of virus transport of virus transport of viral material towards nucleus	host cellular component host intracellular part host cytoskeleton host cell part host intracellular region cellular anatomical entity host intracellular organelle host cell host intracellular membrane-bounded organelle host cell nucleus viral nucleocapsid viral capsid virion component intracellular anatomical structure host cellular component host intracellular part host cytoskeleton host cell part host intracellular region cellular anatomical entity host intracellular organelle host cell host intracellular membrane-bounded organelle host cell nucleus viral nucleocapsid viral capsid virion component intracellular anatomical structure cytoplasm host cell cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M]	IPR004957	Gag polyprotein, N-terminal domain	Domain
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M]	IPR049099	Gag polyprotein, C-terminal	Domain
A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], A [auth H], B [auth I], C [auth J], D [auth K], E [auth L], F [auth M]	IPR049101	Gag polyprotein, conserved central domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.