8OZG
cryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth E] | F_UNCLASSIFIED | e8ozgE2 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth E] | F_UNCLASSIFIED | e8ozgE1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e8ozgB2 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e8ozgB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth G] | F_UNCLASSIFIED | e8ozgG2 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth G] | F_UNCLASSIFIED | e8ozgG1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
L [auth M] | F_UNCLASSIFIED | e8ozgM2 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: F_UNCLASSIFIED | ECOD (1.6) |
L [auth M] | F_UNCLASSIFIED | e8ozgM1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C, E [auth F], G [auth H] | PF13676 | TIR domain (TIR_2) | TIR domain | This is a family of Toll-like receptors. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, C, E [auth F], G [auth H] | TIR domain-containing protein | - | - | |
I [auth J], K [auth L], O [auth P], P [auth Q] | DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | - | - | - |
B, D [auth E], F [auth G], L [auth M] | Piwi domain-containing protein | - | - | |
H [auth I], J [auth K], M [auth N], N [auth O] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C, E [auth F], G [auth H] | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain | Domain |
A, C, E [auth F], G [auth H] | IPR035897 | Toll/interleukin-1 receptor homology (TIR) domain superfamily | Homologous Superfamily |
B, D [auth E], F [auth G], L [auth M] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
B, D [auth E], F [auth G], L [auth M] | IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |