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 8OW0 | pdb_00008ow0

Cryo-EM structure of CBF1-CCAN bound topologically to a centromeric CENP-A nucleosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth b]SCOP2B SuperfamilyCore histone-like 8036586 3001387 SCOP2B (2022-06-29)
F [auth f]SCOP2B SuperfamilyCore histone-like 8036586 3001387 SCOP2B (2022-06-29)
J [auth a]SCOP2B SuperfamilyCore histone-like 8103851 3001387 SCOP2B (2022-06-29)
E [auth e]SCOP2B SuperfamilyCore histone-like 8103851 3001387 SCOP2B (2022-06-29)
G [auth g]SCOP2B SuperfamilyCore histone-like 8036588 3001387 SCOP2B (2022-06-29)
I [auth c]SCOP2B SuperfamilyCore histone-like 8036588 3001387 SCOP2B (2022-06-29)
H [auth h]SCOP2B SuperfamilyCore histone-like 8103853 3001387 SCOP2B (2022-06-29)
D [auth d]SCOP2B SuperfamilyCore histone-like 8103853 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth b]WD40,CAF1C_H4-bde8ow0b1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: WD40,CAF1C_H4-bdECOD (v295.2)
F [auth f]HIG_1_Ne8ow0f1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: HIG_1_NECOD (v295.2)
J [auth a]HIG_1_Ne8ow0a1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: HIG_1_NECOD (v295.2)
E [auth e]WD40,CAF1C_H4-bde8ow0e1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: WD40,CAF1C_H4-bdECOD (v295.2)
G [auth g]HIG_1_Ne8ow0g1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: HIG_1_NECOD (v295.2)
I [auth c]HIG_1_Ne8ow0c1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: HIG_1_NECOD (v295.2)
R [auth O]UcrQe8ow0O1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: UcrQECOD (v295.2)
H [auth h]HIG_1_Ne8ow0h1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: HIG_1_NECOD (v295.2)
D [auth d]HIG_1_Ne8ow0d1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: HIG_1_NECOD (v295.2)
WHIG_1_Ne8ow0W1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: HIG_1_NECOD (v295.2)
P [auth L]HIG_1_Ne8ow0L1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: HIG_1_NECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth E]PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain
M [auth H]PF20993CENPH protein (CENPH)CENPH protein- Family
Q [auth N]PF05238Centromere protein Chl4/mis15/CENP-N (CENP-N)Centromere protein Chl4/mis15/CENP-N- Family
R [auth O]PF09496Cenp-O kinetochore centromere component (CENP-O)Cenp-O kinetochore centromere component- Family
K [auth A],
L [auth B]
PF00010Helix-loop-helix DNA-binding domain (HLH)Helix-loop-helix DNA-binding domainDomain
K [auth A],
L [auth B]
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain
Y [auth Z]PF09447Cnl2/NKP2 family protein (Cnl2_NKP2)Cnl2/NKP2 family protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth D]C0N3 DNA---
B [auth E]C0N3 DNA---
C [auth b],
F [auth f]
Histone H4
E [auth e],
J [auth a]
Histone H3-like centromeric protein CSE4
G [auth g],
I [auth c]
Histone H2A.1
M [auth H]Inner kinetochore subunit MCM16-
N [auth I]Inner kinetochore subunit CTF3-
Q [auth N]Inner kinetochore subunit CHL4
R [auth O]Inner kinetochore subunit MCM21-
V [auth U]Inner kinetochore subunit AME1-
X [auth Y]Inner kinetochore subunit NKP1-
K [auth A],
L [auth B]
Centromere-binding protein 1
D [auth d],
H [auth h]
Histone H2B.1
Y [auth Z]Inner kinetochore subunit NKP2-
Inner kinetochore subunit WIP1
U [auth T]Inner kinetochore subunit CNN1
T [auth Q]Inner kinetochore subunit OKP1-
S [auth P]Inner kinetochore subunit CTF19-
P [auth L]Inner kinetochore subunit IML3-
O [auth K]Inner kinetochore subunit MCM22-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth b],
F [auth f]
IPR009072Histone-foldHomologous Superfamily
C [auth b],
F [auth f]
IPR035425CENP-T/Histone H4, histone foldDomain
C [auth b],
F [auth f]
IPR001951Histone H4Family
C [auth b],
F [auth f]
IPR019809Histone H4, conserved siteConserved Site
E [auth e],
J [auth a]
IPR009072Histone-foldHomologous Superfamily
E [auth e],
J [auth a]
IPR007125Core Histone H2A/H2B/H3 domainDomain
E [auth e],
J [auth a]
IPR000164Histone H3/CENP-AFamily
G [auth g],
I [auth c]
IPR009072Histone-foldHomologous Superfamily
G [auth g],
I [auth c]
IPR002119Histone H2AFamily
G [auth g],
I [auth c]
IPR007125Core Histone H2A/H2B/H3 domainDomain
G [auth g],
I [auth c]
IPR061508Histone H2A, histone foldDomain
G [auth g],
I [auth c]
IPR032454Histone H2A, C-terminal domainDomain
G [auth g],
I [auth c]
IPR032458Histone H2A conserved siteConserved Site
M [auth H]IPR048744Inner kinetochore subunit MCM16Family
N [auth I]IPR063409CTF3, middle TPR domainDomain
N [auth I]IPR063173CTF3, C-terminal domainDomain
Q [auth N]IPR007902Centromere protein Chl4/mis15/CENP-NFamily
R [auth O]IPR018464Centromere protein OFamily
V [auth U]IPR048743Inner kinetochore subunit AME1Domain
K [auth A],
L [auth B]
IPR047206Centromere-binding protein 1-like, bHLHzip domainDomain
K [auth A],
L [auth B]
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainDomain
K [auth A],
L [auth B]
IPR036638Helix-loop-helix DNA-binding domain superfamilyHomologous Superfamily
D [auth d],
H [auth h]
IPR009072Histone-foldHomologous Superfamily
D [auth d],
H [auth h]
IPR000558Histone H2BFamily
D [auth d],
H [auth h]
IPR007125Core Histone H2A/H2B/H3 domainDomain
D [auth d],
H [auth h]
IPR055333Histone H2B, conserved siteConserved Site
Y [auth Z]IPR018565Kinetochore subunit Nkp2/Cnl2Family
U [auth T]IPR063510Inner kinetochore subunit CNN1, C-terminal domainDomain
U [auth T]IPR062674Inner kinetochore subunit CNN1, N-terminal domainDomain
S [auth P]IPR063963Inner kinetochore subunit CTF19, N-terminal domainDomain
S [auth P]IPR063954Inner kinetochore subunit CTF19, C-terminal domainDomain
P [auth L]IPR063524IML3Family
O [auth K]IPR063953MCM22, C-terminal domainDomain