8OVA
CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : PARENTAL STRAIN
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
Q [auth AJ] | SCOP2B Superfamily | Ribosomal protein S8 | 8081973 | 3000709 | SCOP2B (2022-06-29) |
Y [auth AU] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8090998 | 3000034 | SCOP2B (2022-06-29) |
KA [auth A5] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053073 | 3000433 | SCOP2B (2022-06-29) |
NA [auth AC] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063812 | 3001397 | SCOP2B (2022-06-29) |
OA [auth AD] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055706 | 3000034 | SCOP2B (2022-06-29) |
PA [auth AE] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052727 | 3002138 | SCOP2B (2022-06-29) |
PA [auth AE] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052729 | 3000135 | SCOP2B (2022-06-29) |
QA [auth AG] | SCOP2B Superfamily | Homeodomain-like | 8052952 | 3000001 | SCOP2B (2022-06-29) |
QA [auth AG] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052953 | 3001284 | SCOP2B (2022-06-29) |
TA [auth Bb] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8099386 | 3001045 | SCOP2B (2022-06-29) |
VA [auth Bd] | SCOP2B Superfamily | Ribosomal protein L29e | 8053040 | 3002157 | SCOP2B (2022-06-29) |
AB [auth BI] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095971 | 3001045 | SCOP2B (2022-06-29) |
FB [auth Bl] | SCOP2B Superfamily | Translational proteins | 8099564 | 3000811 | SCOP2B (2022-06-29) |
GB [auth Bm] | SCOP2B Superfamily | Ribosomal protein L36e | 8053121 | 3002161 | SCOP2B (2022-06-29) |
KB [auth Bo] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8101617 | 3001320 | SCOP2B (2022-06-29) |
MB [auth Bq] | SCOP2B Superfamily | Ribosomal protein L39e | 8099554 | 3001756 | SCOP2B (2022-06-29) |
WB [auth BV] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053057 | 3002158 | SCOP2B (2022-06-29) |
YB [auth BW] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072052 | 3000433 | SCOP2B (2022-06-29) |
EC [auth BZ] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076748 | 3000334 | SCOP2B (2022-06-29) |
S [auth AM] | SCOP2B Superfamily | S13-like H2TH domain | 8101619 | 3000053 | SCOP2B (2022-06-29) |
V [auth AR] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053133 | 3000068 | SCOP2B (2022-06-29) |
Z [auth AV] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053142 | 3000068 | SCOP2B (2022-06-29) |
CA [auth AY] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053450 | 3002190 | SCOP2B (2022-06-29) |
DA [auth AZ] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8063436 | 3000135 | SCOP2B (2022-06-29) |
FA [auth A0] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053205 | 3002166 | SCOP2B (2022-06-29) |
GA [auth A1] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052768 | 3000135 | SCOP2B (2022-06-29) |
GA [auth A1] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052769 | 3000334 | SCOP2B (2022-06-29) |
GA [auth A1] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052767 | 3001473 | SCOP2B (2022-06-29) |
HA [auth A2] | SCOP2B Superfamily | Ribosomal protein S7 | 8066015 | 3000799 | SCOP2B (2022-06-29) |
IA [auth A3] | SCOP2B Superfamily | GS N-terminal domain-like | 8053164 | 3000408 | SCOP2B (2022-06-29) |
SA [auth Ba] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053048 | 3000334 | SCOP2B (2022-06-29) |
ZA [auth Bf] | SCOP2B Superfamily | Translational proteins | 8099560 | 3000811 | SCOP2B (2022-06-29) |
CB [auth BK] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8099388 | 3000884 | SCOP2B (2022-06-29) |
EB [auth BL] | SCOP2B Superfamily | RL5-like | 8077507 | 3001709 | SCOP2B (2022-06-29) |
LB [auth Bp] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053565 | 3002206 | SCOP2B (2022-06-29) |
NB [auth BQ] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082491 | 3000210 | SCOP2B (2022-06-29) |
OB [auth BR] | SCOP2B Superfamily | Ribosomal protein L22 | 8076714 | 3001078 | SCOP2B (2022-06-29) |
PB [auth Br] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052837 | 3002143 | SCOP2B (2022-06-29) |
PB [auth Br] | SCOP2B Superfamily | Ribosomal protein L4 | 8052838 | 3001146 | SCOP2B (2022-06-29) |
RB [auth Bs] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8098578 | 3001320 | SCOP2B (2022-06-29) |
SB [auth BT] | SCOP2B Superfamily | Ribosomal protein L19 (L19e) | 8106296 | 3000890 | SCOP2B (2022-06-29) |
VB [auth Bu] | SCOP2B Superfamily | Translational machinery components | 8052881 | 3000571 | SCOP2B (2022-06-29) |
XB [auth Bv] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053104 | 3000334 | SCOP2B (2022-06-29) |
AC [auth Bw] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052935 | 3001378 | SCOP2B (2022-06-29) |
FC [auth Bi] | SCOP2B Superfamily | Ribosomal protein L32e | 8102449 | 3000982 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
K [auth AQ] | PF00338 | e8ovaAQ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
L [auth A8] | PF00253 | e8ovaA81 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
Q [auth AJ] | PF00410 | e8ovaAJ1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
Q [auth AJ] | PF00410 | e8ovaAJ2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
R [auth AK] | PF00380 | e8ovaAK1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
U [auth AP] | PF03719 | e8ovaAP1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
U [auth AP] | PF00333 | e8ovaAP3 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
U [auth AP] | PF00333 | e8ovaAP2 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: PF00333 | ECOD (1.6) |
X [auth AT] | PF01282 | e8ovaAT1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF01282 | ECOD (1.6) |
Y [auth AU] | PF03297 | e8ovaAU1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03297 | ECOD (1.6) |
KA [auth A5] | PF01201 | e8ovaA51 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF01201 | ECOD (1.6) |
LA [auth A6] | PF00163,PF01479 | e8ovaA61 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
MA [auth A7] | PF00400 | e8ovaA71 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
NA [auth AC] | PF00318 | e8ovaAC1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
OA [auth AD] | PF03501 | e8ovaAD1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03501 | ECOD (1.6) |
PA [auth AE] | PF00366,PF16205 | e8ovaAE1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366,PF16205 | ECOD (1.6) |
QA [auth AG] | PF08069 | e8ovaAG2 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: PF08069 | ECOD (1.6) |
QA [auth AG] | PF00312 | e8ovaAG1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
TA [auth Bb] | PF00828 | e8ovaBb1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
VA [auth Bd] | PF01779 | e8ovaBd1 | A: extended segments | X: RPL29 (From Topology) | H: RPL29 (From Topology) | T: RPL29 | F: PF01779 | ECOD (1.6) |
WA [auth Be] | PF00181 | e8ovaBe1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
WA [auth Be] | PF03947 | e8ovaBe2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
YA [auth Bg] | PF01248 | e8ovaBg1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
AB [auth BI] | PF17135 | e8ovaBI1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF17135 | ECOD (1.6) |
FB [auth Bl] | PF01247 | e8ovaBl1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF01247 | ECOD (1.6) |
GB [auth Bm] | PF01158 | e8ovaBm1 | A: alpha arrays | X: 60S ribosomal protein rpL36 (L36e) (From Topology) | H: 60S ribosomal protein rpL36 (L36e) (From Topology) | T: 60S ribosomal protein rpL36 (L36e) | F: PF01158 | ECOD (1.6) |
IB [auth Bn] | PF01907 | e8ovaBn1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01907 | ECOD (1.6) |
JB [auth BO] | PF00572 | e8ovaBO1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
KB [auth Bo] | PF01780 | e8ovaBo1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01780 | ECOD (1.6) |
MB [auth Bq] | PF00832 | e8ovaBq1 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: PF00832 | ECOD (1.6) |
QB [auth BS] | F_UNCLASSIFIED | e8ovaBS1 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: F_UNCLASSIFIED | ECOD (1.6) |
QB [auth BS] | PF01775 | e8ovaBS2 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: PF01775 | ECOD (1.6) |
WB [auth BV] | PF01776 | e8ovaBV1 | A: a+b two layers | X: Ribosomal protein L22e (From Topology) | H: Ribosomal protein L22e (From Topology) | T: Ribosomal protein L22e | F: PF01776 | ECOD (1.6) |
YB [auth BW] | PF00238 | e8ovaBW1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
BC [auth Bx] | PF01248 | e8ovaBx1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
CC [auth BY] | PF01246 | e8ovaBY1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF01246 | ECOD (1.6) |
EC [auth BZ] | PF16906 | e8ovaBZ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF16906 | ECOD (1.6) |
GC [auth BP] | PF00467,PF01929 | e8ovaBP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF01929 | ECOD (1.6) |
M [auth A9] | PF01599 | e8ovaA91 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01599 | ECOD (1.6) |
N [auth Az] | PF00076 | e8ovaAz1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF00076 | ECOD (1.6) |
O [auth AH] | PF00411 | e8ovaAH1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
P [auth AI] | PF00203 | e8ovaAI1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
S [auth AM] | PF00416 | e8ovaAM1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
T [auth AO] | PF01090 | e8ovaAO1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01090 | ECOD (1.6) |
V [auth AR] | PF01249 | e8ovaAR1 | A: a+b two layers | X: 40S ribosomal protein rpS21 (S21e) (From Topology) | H: 40S ribosomal protein rpS21 (S21e) (From Topology) | T: 40S ribosomal protein rpS21 (S21e) | F: PF01249 | ECOD (1.6) |
W [auth AS] | PF00164 | e8ovaAS1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
Z [auth AV] | PF01283 | e8ovaAV1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF01283 | ECOD (1.6) |
AA [auth AW] | PF01667 | e8ovaAW1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01667 | ECOD (1.6) |
BA [auth AX] | PF00189 | e8ovaAX1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
BA [auth AX] | PF07650 | e8ovaAX2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
CA [auth AY] | PF04758 | e8ovaAY1 | A: extended segments | X: 40S ribosomal protein S30 (S30e) (From Topology) | H: 40S ribosomal protein S30 (S30e) (From Topology) | T: 40S ribosomal protein S30 (S30e) | F: PF04758 | ECOD (1.6) |
DA [auth AZ] | PF01200 | e8ovaAZ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01200 | ECOD (1.6) |
EA [auth AL] | PF00833 | e8ovaAL1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: PF00833 | ECOD (1.6) |
FA [auth A0] | PF01015 | e8ovaA02 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: PF01015 | ECOD (1.6) |
FA [auth A0] | PF01015 | e8ovaA01 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: PF01015 | ECOD (1.6) |
GA [auth A1] | PF00900 | e8ovaA11 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00900 | ECOD (1.6) |
GA [auth A1] | PF00467,PF16121 | e8ovaA13 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF16121 | ECOD (1.6) |
GA [auth A1] | PF01479,PF08071 | e8ovaA12 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF01479,PF08071 | ECOD (1.6) |
HA [auth A2] | PF00177 | e8ovaA21 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
IA [auth A3] | PF01092 | e8ovaA31 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01092 | ECOD (1.6) |
JA [auth A4] | PF01251 | e8ovaA42 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: PF01251 | ECOD (1.6) |
SA [auth Ba] | PF00467,PF01777 | e8ovaBa1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF01777 | ECOD (1.6) |
UA [auth Bc] | PF01778 | e8ovaBc1 | A: a+b two layers | X: RPL28 (From Topology) | H: RPL28 (From Topology) | T: RPL28 | F: PF01778 | ECOD (1.6) |
XA [auth Bz] | PF05162 | e8ovaBz1 | A: extended segments | X: Ribosomal protein L41-A (From Topology) | H: Ribosomal protein L41-A (From Topology) | T: Ribosomal protein L41-A | F: PF05162 | ECOD (1.6) |
ZA [auth Bf] | PF00297 | e8ovaBf1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
BB [auth Bj] | PF01199 | e8ovaBj1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: PF01199 | ECOD (1.6) |
CB [auth BK] | PF00252 | e8ovaBK1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
DB [auth Bk] | PF00831 | e8ovaBk1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
EB [auth BL] | PF00281,PF00673 | e8ovaBL1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
HB [auth BN] | PF01294 | e8ovaBN1 | A: extended segments | X: RPL13 (From Topology) | H: RPL13 (From Topology) | T: RPL13 | F: PF01294 | ECOD (1.6) |
LB [auth Bp] | PF01781 | e8ovaBp1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: PF01781 | ECOD (1.6) |
NB [auth BQ] | PF00827 | e8ovaBQ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00827 | ECOD (1.6) |
OB [auth BR] | PF00237 | e8ovaBR1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
RB [auth Bs] | PF01020 | e8ovaBs1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01020 | ECOD (1.6) |
SB [auth BT] | PF01280 | e8ovaBT2 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: PF01280 | ECOD (1.6) |
SB [auth BT] | PF01280 | e8ovaBT1 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: PF01280 | ECOD (1.6) |
TB [auth Bt] | PF00935 | e8ovaBt1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00935 | ECOD (1.6) |
UB [auth BU] | PF01157 | e8ovaBU1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01157 | ECOD (1.6) |
VB [auth Bu] | PF14204,PF17144 | e8ovaBu1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF14204,PF17144 | ECOD (1.6) |
XB [auth Bv] | PF01159 | e8ovaBv1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01159 | ECOD (1.6) |
ZB [auth BX] | PF00276 | e8ovaBX1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276 | ECOD (1.6) |
AC [auth Bw] | PF00327,PF08079 | e8ovaBw1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327,PF08079 | ECOD (1.6) |
DC [auth By] | PF00347 | e8ovaBy2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
FC [auth Bi] | PF01655 | e8ovaBi1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: PF01655 | ECOD (1.6) |
HC [auth AF] | PF01248 | e8ovaAF1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth BA] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
A [auth BA] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
C [auth BB] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
D [auth BH] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
I [auth BC] | PF01778 | Ribosomal L28e protein family (Ribosomal_L28e) | Ribosomal L28e protein family | - | Family |
Q [auth AJ] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
R [auth AK] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
U [auth AP] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
U [auth AP] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
X [auth AT] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
KA [auth A5] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
LA [auth A6] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
LA [auth A6] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
MA [auth A7] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
NA [auth AC] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
OA [auth AD] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
PA [auth AE] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
PA [auth AE] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
QA [auth AG] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
AB [auth BI] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
AB [auth BI] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
JB [auth BO] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
JB [auth BO] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
QB [auth BS] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | - | Family |
QB [auth BS] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
WB [auth BV] | PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family |
WB [auth BV] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
YB [auth BW] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
YB [auth BW] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
CC [auth BY] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
CC [auth BY] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain |
EC [auth BZ] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
EC [auth BZ] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
GC [auth BP] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
GC [auth BP] | PF01781 | Ribosomal L38e protein family (Ribosomal_L38e) | Ribosomal L38e protein family | - | Family |
GC [auth BP] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
M [auth A9] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
O [auth AH] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
P [auth AI] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
S [auth AM] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
T [auth AO] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
V [auth AR] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
W [auth AS] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
AA [auth AW] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
BA [auth AX] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
BA [auth AX] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
GA [auth A1] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
GA [auth A1] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
GA [auth A1] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
GA [auth A1] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
GA [auth A1] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
HA [auth A2] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
IA [auth A3] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
JA [auth A4] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
E [auth BG] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
CB [auth BK] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
CB [auth BK] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
EB [auth BL] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
EB [auth BL] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
EB [auth BL] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | - | Domain |
HB [auth BN] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
HB [auth BN] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
NB [auth BQ] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
NB [auth BQ] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
OB [auth BR] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
OB [auth BR] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
G [auth BE] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
G [auth BE] | PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |
SB [auth BT] | PF01280 | Ribosomal protein L19e (Ribosomal_L19e) | Ribosomal protein L19e | - | Family |
SB [auth BT] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
UB [auth BU] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
ZB [auth BX] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
ZB [auth BX] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
H [auth BD] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
HC [auth AF] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |