8OIN
55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
L [auth BC] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082519 | 3000334 | SCOP2B (2021-05-27) |
W [auth BN] | SCOP2B Superfamily | Ribosomal protein L4 | 8096626 | 3001146 | SCOP2B (2021-05-27) |
X [auth BO] | SCOP2B Superfamily | L9 N-domain-like | 8070579 | 3000338 | SCOP2B (2021-05-27) |
AA [auth BR] | SCOP2B Superfamily | Ribosomal protein L13 | 8098010 | 3001134 | SCOP2B (2021-05-27) |
DA [auth BU] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8076055 | 3000884 | SCOP2B (2021-05-27) |
GA [auth BX] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8089132 | 3000334 | SCOP2B (2021-05-27) |
IA [auth BZ] | SCOP2B Superfamily | l21p-like | 8082451 | 3002005 | SCOP2B (2021-05-27) |
TA [auth Bl] | SCOP2B Superfamily | Ribosomal protein L36 | 8083322 | 3001346 | SCOP2B (2021-05-27) |
RB [auth AJ] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8096284 | 3000135 | SCOP2B (2021-05-27) |
SB [auth AK] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052589 | 3000068 | SCOP2B (2021-05-27) |
YB [auth AQ] | SCOP2B Superfamily | Ribosomal protein S21 | 8083456 | 3002159 | SCOP2B (2021-05-27) |
ZB [auth AR] | SCOP2B Superfamily | Mitochondrial 28S ribosomal protein S22-like | 8096620 | 3002074 | SCOP2B (2021-05-27) |
GC [auth AY] | SCOP2B Superfamily | Mitochondrial 28S ribosomal protein S31-like | 8090912 | 3002471 | SCOP2B (2021-05-27) |
JC [auth Ab] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063848 | 3001397 | SCOP2B (2021-05-27) |
OC [auth Ai] | SCOP2B Superfamily | Translational machinery components | 8096616 | 3000571 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B1] | PF16320 | e8oinB11 | A: alpha duplicates or obligate multimers | X: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | T: Ribosomal protein L7/12, oligomerisation (N-terminal) domain | F: PF16320 | ECOD (1.6) |
B [auth B2] | PF16320 | e8oinB21 | A: alpha duplicates or obligate multimers | X: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | T: Ribosomal protein L7/12, oligomerisation (N-terminal) domain | F: PF16320 | ECOD (1.6) |
C [auth B3] | PF16320 | e8oinB31 | A: alpha duplicates or obligate multimers | X: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | T: Ribosomal protein L7/12, oligomerisation (N-terminal) domain | F: PF16320 | ECOD (1.6) |
D [auth B4] | PF16320 | e8oinB41 | A: alpha duplicates or obligate multimers | X: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | T: Ribosomal protein L7/12, oligomerisation (N-terminal) domain | F: PF16320 | ECOD (1.6) |
E [auth B5] | PF16320 | e8oinB51 | A: alpha duplicates or obligate multimers | X: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | T: Ribosomal protein L7/12, oligomerisation (N-terminal) domain | F: PF16320 | ECOD (1.6) |
F [auth B6] | PF16320 | e8oinB61 | A: alpha duplicates or obligate multimers | X: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology) | T: Ribosomal protein L7/12, oligomerisation (N-terminal) domain | F: PF16320 | ECOD (1.6) |
J [auth BA] | PF00237 | e8oinBA1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
K [auth BB] | PF00276 | e8oinBB1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276 | ECOD (1.6) |
L [auth BC] | PF00467,PF17136 | e8oinBC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF17136 | ECOD (1.6) |
M [auth BD] | PF01016 | e8oinBD1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: PF01016 | ECOD (1.6) |
N [auth BE] | PF00830 | e8oinBE1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Mitoribosomal protein bL28m | F: PF00830 | ECOD (1.6) |
O [auth BF] | PF06984 | e8oinBF1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF06984 | ECOD (1.6) |
P [auth BG] | PF00327 | e8oinBG1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327 | ECOD (1.6) |
Q [auth BH] | PF01783 | e8oinBH1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01783 | ECOD (1.6) |
R [auth BI] | PF00471 | e8oinBI1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00471 | ECOD (1.6) |
S [auth BJ] | PF00468 | e8oinBJ1 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: PF00468 | ECOD (1.6) |
T [auth BK] | PF01632 | e8oinBK1 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: PF01632 | ECOD (1.6) |
U [auth BL] | PF00181 | e8oinBL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
U [auth BL] | PF03947 | e8oinBL2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
V [auth BM] | PF00297 | e8oinBM1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
W [auth BN] | PF00573 | e8oinBN1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
X [auth BO] | PF01281 | e8oinBO1 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: PF01281 | ECOD (1.6) |
X [auth BO] | PF22078 | e8oinBO2 | A: a+b two layers | X: Ribosomal protein L9 C-domain (From Topology) | H: Ribosomal protein L9 C-domain (From Topology) | T: Ribosomal protein L9 C-domain | F: PF22078 | ECOD (1.6) |
Z [auth BQ] | PF00298 | e8oinBQ1 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: PF00298 | ECOD (1.6) |
Z [auth BQ] | PF03946 | e8oinBQ2 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: PF03946 | ECOD (1.6) |
AA [auth BR] | PF00572 | e8oinBR1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
BA [auth BS] | PF00238 | e8oinBS1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
CA [auth BT] | PF00828 | e8oinBT1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
DA [auth BU] | PF00252 | e8oinBU1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
EA [auth BV] | PF01196 | e8oinBV1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: PF01196 | ECOD (1.6) |
FA [auth BW] | PF00861 | e8oinBW1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00861 | ECOD (1.6) |
GA [auth BX] | PF01245 | e8oinBX1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01245 | ECOD (1.6) |
HA [auth BY] | PF00453 | e8oinBY1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: PF00453 | ECOD (1.6) |
IA [auth BZ] | PF00829 | e8oinBZ1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: PF00829 | ECOD (1.6) |
JA [auth Ba] | PF18699 | e8oinBa1 | A: extended segments | X: Mitoribosomal protein mL52 (From Topology) | H: Mitoribosomal protein mL52 (From Topology) | T: Mitoribosomal protein mL52 | F: PF18699 | ECOD (1.6) |
KA [auth Bb] | PF10780 | e8oinBb1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: PF10780 | ECOD (1.6) |
NA [auth Be] | PF14978 | e8oinBe1 | A: extended segments | X: Mitoribosomal protein mL63 (From Topology) | H: Mitoribosomal protein mL63 (From Topology) | T: Mitoribosomal protein mL63 | F: PF14978 | ECOD (1.6) |
OA [auth Bf] | PF00472 | e8oinBf1 | A: a+b two layers | X: dsRBD-like | H: Peptidyl-tRNA hydrolase domain-like (From Topology) | T: Peptidyl-tRNA hydrolase domain-like | F: PF00472 | ECOD (1.6) |
PA [auth Bg] | PF10147 | e8oinBg1 | A: extended segments | X: Mitochondrial 54S ribosomal protein L25 (From Topology) | H: Mitochondrial 54S ribosomal protein L25 (From Topology) | T: Mitochondrial 54S ribosomal protein L25 | F: PF10147 | ECOD (1.6) |
QA [auth Bh] | PF01084 | e8oinBh1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF01084 | ECOD (1.6) |
RA [auth Bi] | PF07147 | e8oinBi1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF07147 | ECOD (1.6) |
SA [auth Bj] | F_UNCLASSIFIED | e8oinBj1 | A: a+b two layers | X: a+b domain in Ribosomal protein L1 (From Topology) | H: a+b domain in Ribosomal protein L1 (From Topology) | T: a+b domain in Ribosomal protein L1 | F: F_UNCLASSIFIED | ECOD (1.6) |
TA [auth Bl] | PF00444 | e8oinBl1 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: PF00444 | ECOD (1.6) |
UA [auth Bm] | PF07147 | e8oinBm1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF07147 | ECOD (1.6) |
VA [auth Bn] | PF01161 | e8oinBn1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: PF01161 | ECOD (1.6) |
WA [auth Bo] | PF02824 | e8oinBo2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF02824 | ECOD (1.6) |
WA [auth Bo] | F_UNCLASSIFIED | e8oinBo1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: ThrRS/AlaRS editing domain | F: F_UNCLASSIFIED | ECOD (1.6) |
YA [auth Bq] | PF09809 | e8oinBq1 | A: extended segments | X: Mitochondrial 54S ribosomal protein L27 (From Topology) | H: Mitochondrial 54S ribosomal protein L27 (From Topology) | T: Mitochondrial 54S ribosomal protein L27 | F: PF09809 | ECOD (1.6) |
ZA [auth Br] | PF10210 | e8oinBr1 | A: extended segments | X: Mitoribosomal protein mL42 (From Topology) | H: Mitoribosomal protein mL42 (From Topology) | T: Mitoribosomal protein mL42 | F: PF10210 | ECOD (1.6) |
AB [auth Bs] | PF05047 | e8oinBs1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: PF05047 | ECOD (1.6) |
BB [auth Bt] | PF22935 | e8oinBt2 | A: alpha arrays | X: RNase III catalytic domain-like (From Topology) | H: RNase III catalytic domain-like (From Topology) | T: RNase III catalytic domain-like | F: PF22935 | ECOD (1.6) |
BB [auth Bt] | PF22892 | e8oinBt1 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF22892 | ECOD (1.6) |
CB [auth Bu] | PF04280 | e8oinBu1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: PF04280 | ECOD (1.6) |
DB [auth Bv] | PF11788 | e8oinBv1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF11788 | ECOD (1.6) |
EB [auth Bw] | PF00338 | e8oinBw1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
FB [auth Bx] | PF05046 | e8oinBx1 | A: a+b two layers | X: Glucose permease domain IIB-like | H: eIF1-like (From Topology) | T: eIF1-like | F: PF05046 | ECOD (1.6) |
GB [auth By] | PF10501 | e8oinBy1 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PF10501 | ECOD (1.6) |
HB [auth Bz] | PF10244 | e8oinBz1 | A: alpha bundles | X: Long alpha-hairpin | H: Mitoribosomal protein mL51 (From Topology) | T: Mitoribosomal protein mL51 | F: PF10244 | ECOD (1.6) |
JB [auth AB] | PF10213 | e8oinAB1 | A: a+b two layers | X: dsRBD-like | H: Peptidyl-tRNA hydrolase domain-like (From Topology) | T: Peptidyl-tRNA hydrolase domain-like | F: PF10213 | ECOD (1.6) |
KB [auth AC] | PF14955 | e8oinAC1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF14955 | ECOD (1.6) |
LB [auth AD] | PF08213 | e8oinAD1 | A: extended segments | X: Mitoribosomal protein mS38 (From Topology) | H: Mitoribosomal protein mS38 (From Topology) | T: Mitoribosomal protein mS38 | F: PF08213 | ECOD (1.6) |
MB [auth AE] | PF01250 | e8oinAE1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: PF01250 | ECOD (1.6) |
NB [auth AF] | PF00177 | e8oinAF1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
PB [auth AH] | PF00338 | e8oinAH1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
RB [auth AJ] | PF00164 | e8oinAJ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
SB [auth AK] | PF00253 | e8oinAK1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
TB [auth AL] | PF00312 | e8oinAL1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
UB [auth AM] | PF00886 | e8oinAM1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: PF00886 | ECOD (1.6) |
VB [auth AN] | PF00366 | e8oinAN1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366 | ECOD (1.6) |
WB [auth AO] | PF01084 | e8oinAO1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF01084 | ECOD (1.6) |
XB [auth AP] | PF01084 | e8oinAP1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF01084 | ECOD (1.6) |
YB [auth AQ] | PF01165 | e8oinAQ1 | A: extended segments | X: 30S ribosomal protein S21 (From Topology) | H: 30S ribosomal protein S21 (From Topology) | T: 30S ribosomal protein S21 | F: PF01165 | ECOD (1.6) |
ZB [auth AR] | PF10245 | e8oinAR1 | A: a+b complex topology | X: Mitoribosomal protein mS22 (From Topology) | H: Mitoribosomal protein mS22 (From Topology) | T: Mitoribosomal protein mS22 | F: PF10245 | ECOD (1.6) |
AC [auth AS] | PF10484 | e8oinAS1 | A: alpha arrays | X: RuvA-C | H: Mitoribosomal protein mS23 (From Topology) | T: Mitoribosomal protein mS23 | F: PF10484 | ECOD (1.6) |
BC [auth AT] | PF05047 | e8oinAT1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: PF05047 | ECOD (1.6) |
CC [auth AU] | PF14943 | e8oinAU1 | A: extended segments | X: Mitoribosomal protein mS26 (From Topology) | H: Mitoribosomal protein mS26 (From Topology) | T: Mitoribosomal protein mS26 | F: PF14943 | ECOD (1.6) |
DC [auth AV] | PF10037 | e8oinAV1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF10037 | ECOD (1.6) |
EC [auth AW] | PF10246 | e8oinAW1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF10246 | ECOD (1.6) |
FC [auth AX] | PF10236 | e8oinAX2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF10236 | ECOD (1.6) |
FC [auth AX] | PF10236 | e8oinAX1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF10236 | ECOD (1.6) |
HC [auth AZ] | PF08293 | e8oinAZ1 | A: extended segments | X: Mitoribosomal protein mS33 (From Topology) | H: Mitoribosomal protein mS33 (From Topology) | T: Mitoribosomal protein mS33 | F: PF08293 | ECOD (1.6) |
JC [auth Ab] | PF00318 | e8oinAb1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
KC [auth Ac] | PF06747 | e8oinAc1 | A: few secondary structure elements | X: p8-MTCP1-related (From Topology) | H: p8-MTCP1-related (From Topology) | T: p8-MTCP1-related | F: PF06747 | ECOD (1.6) |
LC [auth Ad] | PF03719 | e8oinAd3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
LC [auth Ad] | PF00333 | e8oinAd1 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
LC [auth Ad] | PF21251 | e8oinAd2 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: PF21251 | ECOD (1.6) |
NC [auth Ag] | PF00380 | e8oinAg1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
OC [auth Ai] | PF00411 | e8oinAi1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
PC [auth Aj] | PF16053 | e8oinAj1 | A: beta barrels | X: SH3 | H: Mitoribosomal protein mS34 (From Topology) | T: Mitoribosomal protein mS34 | F: PF16053 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16320 | Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N) | Ribosomal protein L7/L12 dimerisation domain | This is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1]. | Domain | |
J [auth BA] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
J [auth BA] | PF18699 | Mitoribosomal protein mL52 (MRPL52) | Mitoribosomal protein mL52 | - | Family |
K [auth BB] | PF10780 | 39S ribosomal protein L53/MRP-L53 (MRP_L53) | 39S ribosomal protein L53/MRP-L53 | - | Family |
K [auth BB] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
L [auth BC] | PF08561 | Mitochondrial ribosomal protein L37 (Ribosomal_L37) | Mitochondrial ribosomal protein L37 | - | Family |
L [auth BC] | PF17136 | Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24) | Ribosomal proteins 50S L24/mitochondrial 39S L24 | - | Family |
L [auth BC] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
N [auth BE] | PF14978 | Mitochondrial ribosome protein 63 (MRP-63) | Mitochondrial ribosome protein 63 | - | Family |
N [auth BE] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
O [auth BF] | PF00472 | RF-1 domain (RF-1) | RF-1 domain | - | Family |
O [auth BF] | PF06984 | Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47) | Mitochondrial 39-S ribosomal protein L47 (MRP-L47) | - | Family |
P [auth BG] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
Q [auth BH] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
Q [auth BH] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
S [auth BJ] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
T [auth BK] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
U [auth BL] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
U [auth BL] | PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |
U [auth BL] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | - | Domain |
V [auth BM] | PF07147 | Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9) | Mitochondrial 28S ribosomal protein S30 (PDCD9) | - | Family |
V [auth BM] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
W [auth BN] | PF01161 | Phosphatidylethanolamine-binding protein (PBP) | Phosphatidylethanolamine-binding protein | - | Domain |
W [auth BN] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
X [auth BO] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | - | Domain |
X [auth BO] | PF22078 | Large ribosomal subunit protein bL9m C-terminal domain (Ribosomal_bL9m_C) | Large ribosomal subunit protein bL9m C-terminal domain | This entry represents a presumed domain found at the C-terminal of the large ribosomal subunit protein bL9m (mitochondrial) from animals. This domain may adopt a similar fold than prokaryotic large ribosomal subunit protein bL9. | Domain |
Y [auth BP] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
Z [auth BQ] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |
AA [auth BR] | PF10210 | Mitochondrial 28S ribosomal protein S32 (MRP-S32) | Mitochondrial 28S ribosomal protein S32 | - | Family |
AA [auth BR] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
BA [auth BS] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
BA [auth BS] | PF05047 | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8) | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain | The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ... | Domain |
CA [auth BT] | PF22892 | MRPL44 dsRNA-binding domain (DSRM_MRPL44) | MRPL44 dsRNA-binding domain | This double stranded RNA-binding domain is found in the Large ribosomal subunit protein mL44 protein. | Domain |
CA [auth BT] | PF22935 | Large ribosomal subunit protein mL44, endonuclease domain (RM44_endonuclase) | Large ribosomal subunit protein mL44, endonuclease domain | Large ribosomal subunit protein mL44 (RM44) is a component of the 39S subunit of mitochondrial ribosome. It may play a role in the assembly/stability of nascent mitochondrial polypeptides exiting the ribosome. This entry represents the endonuclease ( ... | Domain |
CA [auth BT] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
DA [auth BU] | PF04280 | Tim44-like domain (Tim44) | Tim44-like domain | Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostati ... | Domain |
DA [auth BU] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
EA [auth BV] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
EA [auth BV] | PF11788 | 39S mitochondrial ribosomal protein L46 (MRP-L46) | 39S mitochondrial ribosomal protein L46 | - | Family |
FA [auth BW] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
FA [auth BW] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
GA [auth BX] | PF05046 | Mitochondrial large subunit ribosomal protein (Img2) (Img2) | Mitochondrial large subunit ribosomal protein (Img2) | This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast [1]. | Domain |
GA [auth BX] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
HA [auth BY] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
HA [auth BY] | PF10501 | Ribosomal subunit 39S (Ribosomal_L50) | Ribosomal subunit 39S | The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absenc ... | Domain |
IA [auth BZ] | PF10244 | Mitochondrial ribosomal subunit (MRP-L51) | Mitochondrial ribosomal subunit | - | Family |
IA [auth BZ] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
IB [auth AA] | PF03462 | PCRF domain (PCRF) | PCRF domain | This domain is found in peptide chain release factors. | Domain |
IB [auth AA] | PF00472 | RF-1 domain (RF-1) | RF-1 domain | - | Family |
JB [auth AB] | PF10213 | Mitochondrial ribosomal subunit protein (MRP-S28) | Mitochondrial ribosomal subunit protein | - | Family |
JB [auth AB] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
KB [auth AC] | PF14955 | Mitochondrial ribosome subunit S24 (MRP-S24) | Mitochondrial ribosome subunit S24 | - | Family |
KB [auth AC] | PF06747 | CHCH domain (CHCH) | CHCH domain | we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extende ... | Domain |
LB [auth AD] | PF21251 | Small ribosomal subunit protein uS5m, N-terminal (Ribosomal_uS5m_N) | Small ribosomal subunit protein uS5m, N-terminal | This entry represents an extension found at the N-terminal of the mitochondrial 28S Small ribosomal subunit protein uS5m [1,2]. This region lines a part of the mRNA entry path and connects the 28S subunit body to the head forming a latch across the m ... | Domain |
MB [auth AE] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | - | Domain |
MB [auth AE] | PF22330 | Small ribosomal subunit protein mS39, PPR (Rib_mS39_PPR) | Small ribosomal subunit protein mS39, PPR | - | Repeat |
NB [auth AF] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
PB [auth AH] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
RB [auth AJ] | PF16053 | Mitochondrial 28S ribosomal protein S34 (MRP-S34) | Mitochondrial 28S ribosomal protein S34 | - | Family |
RB [auth AJ] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
SB [auth AK] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
TB [auth AL] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
UB [auth AM] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
VB [auth AN] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
WB [auth AO] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
XB [auth AP] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
YB [auth AQ] | PF01165 | Ribosomal protein S21 (Ribosomal_S21) | Ribosomal protein S21 | - | Family |
ZB [auth AR] | PF10245 | Mitochondrial 28S ribosomal protein S22 (MRP-S22) | Mitochondrial 28S ribosomal protein S22 | - | Family |
AC [auth AS] | PF10484 | Mitochondrial ribosomal protein S23 (MRP-S23) | Mitochondrial ribosomal protein S23 | - | Family |
BC [auth AT] | PF05047 | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8) | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain | The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ... | Domain |
FC [auth AX] | PF10236 | Mitochondrial ribosomal death-associated protein 3 (DAP3) | Mitochondrial ribosomal death-associated protein 3 | - | Family |
HC [auth AZ] | PF08293 | Mitochondrial ribosomal subunit S27 (MRP-S33) | Mitochondrial ribosomal subunit S27 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
IC [auth Aa] | O75570 | : 
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
H [auth B8] | 1MA | Parent Component: A |
H [auth B8] | OMG | Parent Component: G |
H [auth B8] | OMU | Parent Component: U |
H [auth B8] | PSU | Parent Component: U |
I [auth B9] | MIA | Parent Component: A |
K [auth BB] | AYA | Parent Component: ALA |
AA [auth BR] | SAC | Parent Component: SER |
KA [auth Bb] | AYA | Parent Component: ALA |
AB [auth Bs] | ACE | AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 | : 
IB [auth AA] | 5MC | Parent Component: C :  AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 |
IB [auth AA] | 5MU | Parent Component: U :  AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 |
IB [auth AA] | B8T | Parent Component: C :  AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 |
IB [auth AA] | MA6 | Parent Component: A :  AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 |
YB [auth AQ] | AYA | Parent Component: ALA :  AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 |
KC [auth Ac] | AYA | Parent Component: ALA :  AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 |
OC [auth Ai] | 5F0 | AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 | :