Annotations: 8OIE

Iron Nitrogenase Complex from Rhodobacter capsulatus

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	Cullin_AB	e8oieJ1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.2)
I	Cullin_AB	e8oieI1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.2)
E	Cullin_AB	e8oieE1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.2)
D		e8oieD1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
H	Cullin_AB	e8oieH1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.2)
C		e8oieC1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
G	Cullin_AB	e8oieG1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.2)
B		e8oieB1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.2)
A	Oxidored_nitro	e8oieA01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Oxidored_nitro	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D, E, I, J	PF00142	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family (Fer4_NifH)	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family		Domain
C, H	PF00148	Nitrogenase component 1 type Oxidoreductase (Oxidored_nitro)	Nitrogenase component 1 type Oxidoreductase		Domain
B, G	PF03139	Vanadium/alternative nitrogenase delta subunit (AnfG_VnfG)	Vanadium/alternative nitrogenase delta subunit	-	Family
A, F	PF00148	Nitrogenase component 1 type Oxidoreductase (Oxidored_nitro)	Nitrogenase component 1 type Oxidoreductase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, E, I, J	Nitrogenase iron protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding cation binding metal ion binding oxidoreductase activity nitrogenase activity oxidoreductase activity, acting on iron-sulfur proteins as donors catalytic activity oxidoreductase activity, acting on iron-sulfur proteins as donors, dinitrogen as acceptor	-	-
C, H	Nitrogenase iron-iron protein, beta subunit	oxidoreductase activity nitrogenase activity oxidoreductase activity, acting on iron-sulfur proteins as donors catalytic activity oxidoreductase activity, acting on iron-sulfur proteins as donors, dinitrogen as acceptor	-	-
B, G	Nitrogenase iron-iron protein delta chain	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding iron-sulfur cluster binding metal cluster binding cation binding transition metal ion binding iron ion binding metal ion binding oxidoreductase activity nitrogenase activity oxidoreductase activity, acting on iron-sulfur proteins as donors catalytic activity oxidoreductase activity, acting on iron-sulfur proteins as donors, dinitrogen as acceptor	-	-
A, F	Nitrogenase protein alpha chain	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding iron-sulfur cluster binding metal cluster binding cation binding metal ion binding oxidoreductase activity nitrogenase activity oxidoreductase activity, acting on iron-sulfur proteins as donors catalytic activity oxidoreductase activity, acting on iron-sulfur proteins as donors, dinitrogen as acceptor	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D, E, I, J	IPR030655	NifH/chlL conserved site	Conserved Site
D, E, I, J	IPR000392	NifH/frxC family	Family
D, E, I, J	IPR005977	Nitrogenase iron protein NifH	Family
D, E, I, J	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C, H	IPR000510	Nitrogenase/oxidoreductase, component 1	Domain
C, H	IPR000318	Nitrogenase component 1, conserved site	Conserved Site
C, H	IPR050152	ChlB/BchB/BchZ	Family
C, H	IPR014280	Nitrogenase iron-iron, beta subunit	Family
B, G	IPR014278	Nitrogenase iron-iron, delta subunit	Family
B, G	IPR004349	Vanadium/alternative nitrogenase delta subunit	Family
A, F	IPR000510	Nitrogenase/oxidoreductase, component 1	Domain
A, F	IPR000318	Nitrogenase component 1, conserved site	Conserved Site
A, F	IPR010143	Nitrogenase component 1, alpha chain	Family
A, F	IPR005974	Nitrogenase alpha chain	Family
A, F	IPR011290	Nitrogenase iron-iron protein, alpha chain	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8OIE | pdb_00008oie

Iron Nitrogenase Complex from Rhodobacter capsulatus

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage