8ODN | pdb_00008odn

RcpA-TadD with C13 symmetry from the Pseudomonas aeruginosa Tight Adherence Secretion System

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	fn3	e8odnA01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: fn3	ECOD (v294.2)
E	DNA_topoisoIV	e8odnE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
I	DNA_topoisoIV	e8odnI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
K	DNA_topoisoIV	e8odnK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
M	DNA_topoisoIV	e8odnM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
O	DNA_topoisoIV	e8odnO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
Q	DNA_topoisoIV	e8odnQ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
S	DNA_topoisoIV	e8odnS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
U [auth V]	DNA_topoisoIV	e8odnV1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
W [auth X]	DNA_topoisoIV	e8odnX1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
Y [auth Z]	DNA_topoisoIV	e8odnZ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
G	DNA_topoisoIV	e8odnG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
C	DNA_topoisoIV	e8odnC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
B	fn3	e8odnB01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: fn3	ECOD (v294.2)
D	DNA_topoisoIV	e8odnD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
F	DNA_topoisoIV	e8odnF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
H	DNA_topoisoIV	e8odnH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
J	DNA_topoisoIV	e8odnJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
L	DNA_topoisoIV	e8odnL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
N	DNA_topoisoIV	e8odnN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
P	DNA_topoisoIV	e8odnP1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
R	DNA_topoisoIV	e8odnR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
T	DNA_topoisoIV	e8odnT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
V [auth W]	DNA_topoisoIV	e8odnW1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
X [auth Y]	DNA_topoisoIV	e8odnY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
Z [auth a]	DNA_topoisoIV	e8odna1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G, I, A, C, E, G, I, K, M, O, Q, S, U [auth V], W [auth X], Y [auth Z]	PF00263	Bacterial type II and III secretion system protein (Secretin)	Bacterial type II and III secretion system protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G, I, A, C, E, G, I, K, M, O, Q, S, U [auth V], W [auth X], Y [auth Z]	RcpA	-	establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization cellular process intracellular protein localization	protein-containing complex type II protein secretion system complex
B, D, F, H, J, B, D, F, H, J, L, N, P, R, T, V [auth W], X [auth Y], Z [auth a]	TPR repeat-containing protein PA4299	-	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G, I, A, C, E, G, I, K, M, O, Q, S, U [auth V], W [auth X], Y [auth Z]	IPR050810	Bacterial Secretion System Channel Protein	Family
A, C, E, G, I, A, C, E, G, I, K, M, O, Q, S, U [auth V], W [auth X], Y [auth Z]	IPR004846	Type II/III secretion system, secretin-like domain	Domain
A, C, E, G, I, A, C, E, G, I, K, M, O, Q, S, U [auth V], W [auth X], Y [auth Z]	IPR001775	GspD/PilQ family	Family
A, C, E, G, I, A, C, E, G, I, K, M, O, Q, S, U [auth V], W [auth X], Y [auth Z]	IPR032789	Pilus formation protein, N-terminal	Domain
B, D, F, H, J, B, D, F, H, J, L, N, P, R, T, V [auth W], X [auth Y], Z [auth a]	IPR016931	Uncharacterised conserved protein UCP029658, TPR	Family
B, D, F, H, J, B, D, F, H, J, L, N, P, R, T, V [auth W], X [auth Y], Z [auth a]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
B, D, F, H, J, B, D, F, H, J, L, N, P, R, T, V [auth W], X [auth Y], Z [auth a]	IPR019734	Tetratricopeptide repeat	Repeat

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.