8KFA | pdb_00008kfa

Cryo-EM structure of HSV-1 gB with D48 Fab complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth C]SCOP2B SuperfamilyViral glycoprotein ectodomain-like 8034129 3001498 SCOP2B (2022-06-29)
F [auth B]SCOP2B SuperfamilyViral glycoprotein ectodomain-like 8034129 3001498 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyViral glycoprotein ectodomain-like 8034129 3001498 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth C]Hepatitis_coree8kfaC2 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Hepatitis_coreECOD (v295)
F [auth B]Hepatitis_coree8kfaB2 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Hepatitis_coreECOD (v295)
C [auth A]UBXe8kfaA02 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UBXECOD (v295)
H [auth G]Hepatitis_coree8kfaG1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Hepatitis_coreECOD (v295)
E [auth F]Hepatitis_coree8kfaF1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Hepatitis_coreECOD (v295)
B [auth L]UBXe8kfaL01 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UBXECOD (v295)
G [auth E]Hepatitis_coree8kfaE1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Hepatitis_coreECOD (v295)
DHepatitis_coree8kfaD1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Hepatitis_coreECOD (v295)
A [auth H]UBXe8kfaH01 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: UBXECOD (v295)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth L],
E [auth F],
H [auth G]
Light ChainIGKV1 Kappaenvelope glycoprotein bSAbDab (2026-07-10)
A [auth H],
D,
G [auth E]
Heavy ChainIGHV3 -envelope glycoprotein bSAbDab (2026-07-10)