8KEK
Monomer state of SARS-CoV Spike protein complexed with antibody PW5-535
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | SARS coronavirus receptor-binding domain-like | 8041894 | 3001706 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | Coronavirus S1 glycoprotein, domain C-like | 8092657 | 3002615 | SCOP2B (2022-06-29) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth H] | Fab PW5-535, anti-SARS coronavirus - SARS-CoV, broadly | H-GAMMA-1 | Severe acute respiratory syndrome coronavirus (SARS-CoV) (SARS-CoV), Homo sapiens (human) | IGHV3-13*01, IGHV3-13*04, IGHJ6*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11, IGHG1*15, IGHG1*16 | V-DOMAIN VH, C-DOMAIN CH1, C-DOMAIN CH2, C-DOMAIN CH3 | IG | FAB-GAMMA-1_KAPPA | IMGT (202439-0) |
B [auth L] | Fab PW5-535, anti-SARS coronavirus - SARS-CoV, broadly | L-KAPPA | Severe acute respiratory syndrome coronavirus (SARS-CoV) (SARS-CoV), Homo sapiens (human) | IGKV1-39*01, IGKV1D-39*01, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202439-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth H] | Heavy Chain | IGHV3 | - | spike glycoprotein | SAbDab (2024-10-04) |
B [auth L] | Light Chain | IGKV1 | Kappa | spike glycoprotein | SAbDab (2024-10-04) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A] | PF16451 | Betacoronavirus-like spike glycoprotein S1, N-terminal (bCoV_S1_N) | Betacoronavirus-like spike glycoprotein S1, N-terminal | This entry represents the N-terminal domain of the betacoronavirus-like trimeric spike glycoprotein. The distal S1 subunit of the coronavirus spike protein is responsible for receptor binding. S1 contains two domains; an N-terminal galectin-like doma ... | Domain |
C [auth A] | PF09408 | Betacoronavirus spike glycoprotein S1, receptor binding (bCoV_S1_RBD) | Betacoronavirus spike glycoprotein S1, receptor binding | This entry represents the receptor binding domain (S1 RBD) of the betacoronavirus spike glycoprotein. The spike glycoprotein is arranged in trimers on the surface of the viral membrane and is essential for viral entry. The spike protein is transla ... | Domain |