8KDT
The local refined map of SARS-CoV Spike protein complexed with antibody PW5-5
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth H] | Fab PW5-5, anti-SARS coronavirus - SARS-CoV, broadly neutralizing | H-GAMMA-1 | Homo sapiens (human), Severe acute respiratory syndrome coronavirus (SARS-CoV) (SARS-CoV) | IGHV1-46*01, IGHV1-46*03, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11, IGHG1*15, IGHG1*16 | V-DOMAIN VH, C-DOMAIN CH1, C-DOMAIN CH2, C-DOMAIN CH3 | IG | FAB-GAMMA-1_KAPPA | IMGT (202439-0) |
C [auth L] | Fab PW5-5, anti-SARS coronavirus - SARS-CoV, broadly neutralizing | V-KAPPA | Homo sapiens (human), Severe acute respiratory syndrome coronavirus (SARS-CoV) (SARS-CoV) | IGKV3-11*01, IGKJ2*01, IGKJ2*02 | V-DOMAIN V-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202439-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth H] | Heavy Chain | IGHV1 | - | spike glycoprotein | SAbDab (2024-10-04) |
C [auth L] | Light Chain | IGKV3 | Kappa | spike glycoprotein | SAbDab (2024-10-04) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09408 | Betacoronavirus spike glycoprotein S1, receptor binding (bCoV_S1_RBD) | Betacoronavirus spike glycoprotein S1, receptor binding | This entry represents the receptor binding domain (S1 RBD) of the betacoronavirus spike glycoprotein. The spike glycoprotein is arranged in trimers on the surface of the viral membrane and is essential for viral entry. The spike protein is transla ... | Domain | |