8JPX
Cryo-EM structure of PfAgo-guide DNA-target DNA complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Ribonuclease H-like | 8040608 | 3000143 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | PAZ domain | 8040607 | 3001750 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | RNA-binding domain, RBD | 8091463 | 3000110 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | Mid domain of argonaute | 8091464 | 3002210 | SCOP2B (2022-06-29) |
D [auth A] | SCOP2B Superfamily | PAZ domain | 8040607 | 3001750 | SCOP2B (2022-06-29) |
D [auth A] | SCOP2B Superfamily | Ribonuclease H-like | 8040608 | 3000143 | SCOP2B (2022-06-29) |
D [auth A] | SCOP2B Superfamily | Mid domain of argonaute | 8091464 | 3002210 | SCOP2B (2022-06-29) |
D [auth A] | SCOP2B Superfamily | RNA-binding domain, RBD | 8091463 | 3000110 | SCOP2B (2022-06-29) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], D [auth A] | PF22476 | Argonaute, N-terminal domain (Ago_N_3) | Argonaute, N-terminal domain | This domain is found at the N-terminal end of Protein argonaute from Pyrococcus furiosus (Ago), a component of the RNAi effector complex (RISC). Ago is organised into four domains: N (this entry), PAZ (Pfam:PF12212), middle and PIWI (Pfam:PF02171). T ... | Domain |
A [auth B], D [auth A] | PF02171 | Piwi domain (Piwi) | Piwi domain | - | Family |
A [auth B], D [auth A] | PF12212 | PAZ domain (PAZ_2) | PAZ domain | This entry corresponds to the PAZ domain found in some archaeal argonaute proteins [1]. It is an siRNA binding domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], D [auth A] | IPR021103 | Argonaute PAZ domain, archaea | Domain |
A [auth B], D [auth A] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
A [auth B], D [auth A] | IPR036085 | PAZ domain superfamily | Homologous Superfamily |
A [auth B], D [auth A] | IPR003165 | Piwi domain | Domain |
A [auth B], D [auth A] | IPR003100 | PAZ domain | Domain |
A [auth B], D [auth A] | IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |