8JNF

The cryo-EM structure of the RAD51 filament bound to the nucleosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRecA-like P-loop NTPases 8056644 3002019 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyHelix-hairpin-helix tandem 8056645 3000163 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRecA-like P-loop NTPases 8056644 3002019 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyHelix-hairpin-helix tandem 8056645 3000163 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyHelix-hairpin-helix tandem 8056645 3000163 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyRecA-like P-loop NTPases 8056644 3002019 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyHelix-hairpin-helix tandem 8056645 3000163 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyRecA-like P-loop NTPases 8056644 3002019 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyHelix-hairpin-helix tandem 8056645 3000163 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyRecA-like P-loop NTPases 8056644 3002019 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyRecA-like P-loop NTPases 8056644 3002019 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyHelix-hairpin-helix tandem 8056645 3000163 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
C, G
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
K, L, M, N, O
PF14520Helix-hairpin-helix domain (HHH_5)Helix-hairpin-helix domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, E
Histone H3.1
B, F
Histone H4
C, G
Histone H2A type 1-B/E
D, H
Histone H2B type 1-J
DNA (156-MER)---
DNA (153-MER)---
K, L, M, N, O
DNA repair protein RAD51 homolog 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, E
IPR009072Histone-foldHomologous Superfamily
A, E
IPR007125Histone H2A/H2B/H3Domain
A, E
IPR000164Histone H3/CENP-AFamily
B, F
IPR009072Histone-foldHomologous Superfamily
B, F
IPR035425CENP-T/Histone H4, histone foldDomain
B, F
IPR001951Histone H4Family
B, F
IPR019809Histone H4, conserved siteConserved Site
B, F
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
C, G
IPR009072Histone-foldHomologous Superfamily
C, G
IPR007125Histone H2A/H2B/H3Domain
C, G
IPR002119Histone H2AFamily
C, G
IPR032454Histone H2A, C-terminal domainDomain
C, G
IPR032458Histone H2A conserved siteConserved Site
D, H
IPR009072Histone-foldHomologous Superfamily
D, H
IPR007125Histone H2A/H2B/H3Domain
D, H
IPR000558Histone H2BFamily
K, L, M, N, O
IPR013632DNA recombination and repair protein Rad51-like, C-terminalDomain
K, L, M, N, O
IPR020587DNA recombination and repair protein RecA, monomer-monomer interfaceDomain
K, L, M, N, O
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
K, L, M, N, O
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainDomain
K, L, M, N, O
IPR003593AAA+ ATPase domainDomain
K, L, M, N, O
IPR011941DNA recombination/repair protein Rad51Family
K, L, M, N, O
IPR016467DNA recombination and repair protein, RecA-likeFamily
K, L, M, N, O
IPR010995DNA repair Rad51/transcription factor NusA, alpha-helicalHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, E
PharosP68431
B, F
PharosP62805
C, G
PharosP04908
D, H
PharosP06899
K, L, M, N, O
PharosQ06609