8J9Y
cryo-EM structure of viral topoisomerase in conformation 1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF00521 | e8j9yB4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF00521 | ECOD (1.6) |
A [auth B] | F_UNCLASSIFIED | e8j9yB5 | A: alpha bundles | X: alpha-helical domain in type II DNA topoisomerase (From Topology) | H: alpha-helical domain in type II DNA topoisomerase (From Topology) | T: alpha-helical domain in type II DNA topoisomerase | F: F_UNCLASSIFIED | ECOD (1.6) |
A [auth B] | PF16898 | e8j9yB1 | A: a+b two layers | X: SSHS domain | H: SSHS domain in type II DNA topoisomerase (From Topology) | T: SSHS domain in type II DNA topoisomerase | F: PF16898 | ECOD (1.6) |
A [auth B] | PF00521 | e8j9yB2 | A: a+b two layers | X: a+b domain in type II DNA topoisomerase (From Topology) | H: a+b domain in type II DNA topoisomerase (From Topology) | T: a+b domain in type II DNA topoisomerase | F: PF00521 | ECOD (1.6) |
A [auth B] | F_UNCLASSIFIED | e8j9yB3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth A] | PF00521 | e8j9yA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF00521 | ECOD (1.6) |
B [auth A] | F_UNCLASSIFIED | e8j9yA2 | A: alpha bundles | X: alpha-helical domain in type II DNA topoisomerase (From Topology) | H: alpha-helical domain in type II DNA topoisomerase (From Topology) | T: alpha-helical domain in type II DNA topoisomerase | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth A] | PF16898 | e8j9yA3 | A: a+b two layers | X: SSHS domain | H: SSHS domain in type II DNA topoisomerase (From Topology) | T: SSHS domain in type II DNA topoisomerase | F: PF16898 | ECOD (1.6) |
B [auth A] | PF00521 | e8j9yA4 | A: a+b two layers | X: a+b domain in type II DNA topoisomerase (From Topology) | H: a+b domain in type II DNA topoisomerase (From Topology) | T: a+b domain in type II DNA topoisomerase | F: PF00521 | ECOD (1.6) |
B [auth A] | F_UNCLASSIFIED | e8j9yA5 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF16898 | C-terminal associated domain of TOPRIM (TOPRIM_C) | C-terminal associated domain of TOPRIM | - | Family |
A [auth B], B [auth A] | PF00521 | DNA gyrase/topoisomerase IV, subunit A (DNA_topoisoIV) | DNA gyrase/topoisomerase IV, subunit A | - | Family |