8J5K

Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CA [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH8094731 3001547 SCOP2B (2021-05-27)
G [auth H]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH8094731 3001547 SCOP2B (2021-05-27)
JA [auth o]SCOP2B SuperfamilyOMPA barrel-like8095677 3000208 SCOP2B (2021-05-27)
N [auth O]SCOP2B SuperfamilyOMPA barrel-like8095677 3000208 SCOP2B (2021-05-27)
MA [auth u]SCOP2B SuperfamilyPsbU/PolX domain-like8094223 3000893 SCOP2B (2021-05-27)
Q [auth U]SCOP2B SuperfamilyPsbU/PolX domain-like8094223 3000893 SCOP2B (2021-05-27)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
W [auth a]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
B,
X [auth b]		PF00421Photosystem II protein (PSII)Photosystem II protein- Family
C,
Y [auth c]		PF00421Photosystem II protein (PSII)Photosystem II protein- Family
D,
Z [auth d]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
AA [auth e],
E		PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
AA [auth e],
E		PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
BA [auth f],
F		PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
CA [auth h],
G [auth H]		PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
DA [auth i],
H [auth I]		PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
EA [auth j],
I [auth J]		PF01788PsbJ (PsbJ)PsbJ- Family
FA [auth k],
J [auth K]		PF02533Photosystem II 4 kDa reaction centre component (PsbK)Photosystem II 4 kDa reaction centre component- Family
GA [auth l],
K [auth L]		PF02419PsbL protein (PsbL)PsbL protein- Family
JA [auth o],
N [auth O]		PF01716Manganese-stabilising protein / photosystem II polypeptide (MSP)Manganese-stabilising protein / photosystem II polypeptide- Family
LA [auth t],
P [auth T]		PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
MA [auth u],
Q [auth U]		PF06514Photosystem II 12 kDa extrinsic protein (PsbU) (PsbU)Photosystem II 12 kDa extrinsic protein (PsbU)- Family
NA [auth v],
R [auth V]		PF14495Cytochrome c-550 domain (Cytochrom_C550)Cytochrome c-550 domainThis domain is a heme binding cytochrome known as cytochrome c550, or cytochrome c549, or PsbV [1].Domain
PA [auth x],
T [auth X]		PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
QA [auth y],
U [auth Y]		PF06298Photosystem II protein Y (PsbY) (PsbY)Photosystem II protein Y (PsbY)- Family
RA [auth z],
V [auth Z]		PF01737YCF9 (Ycf9)YCF9- Family
DB [auth 1],
UA [auth 6]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
VA [auth p],
YA [auth P]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
AB [auth 8],
XA [auth 3]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
W [auth a]		PsbA
B,
X [auth b]		PsbB
C,
Y [auth c]		PsbC
D,
Z [auth d]		PsbD
AA [auth e],
E		PsbE
BA [auth f],
F		PsbF
CA [auth h],
G [auth H]		PsbH
DA [auth i],
H [auth I]		PsbI-
EA [auth j],
I [auth J]		PsbJ-
FA [auth k],
J [auth K]		PsbK-
GA [auth l],
K [auth L]		PsbL-
HA [auth m],
L [auth M]		PsbM-
IA [auth n],
M [auth N]		Psb34---
JA [auth o],
N [auth O]		PsbO-
KA [auth q],
O [auth Q]		PsbQ'- -
LA [auth t],
P [auth T]		PsbT-
MA [auth u],
Q [auth U]		PsbU-
NA [auth v],
R [auth V]		PsbV
OA [auth w],
S [auth W]		PsbW---
PA [auth x],
T [auth X]		PsbX-
QA [auth y],
U [auth Y]		PsbY
RA [auth z],
V [auth Z]		PsbZ-
BB [auth 0],
SA [auth 5]		FCPII-G, fucoxanthin chlorophyll a/c binding protein---
CB [auth 2],
TA [auth 7]		FCPII-H2, fucoxanthin chlorophyll a/c binding protein---
DB [auth 1],
UA [auth 6]		FCPII-H1, fucoxanthin chlorophyll a/c binding protein
VA [auth p],
YA [auth P]		FCPII-I, fucoxanthin chlorophyll a/c binding protein
WA [auth 4],
ZA [auth 9]		FCPII-K, fucoxanthin chlorophyll a/c binding protein---
AB [auth 8],
XA [auth 3]		FCPII-J, fucoxanthin chlorophyll a/c binding protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
W [auth a]		IPR005867Photosystem II protein D1Family
A,
W [auth a]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
W [auth a]		IPR000484Photosynthetic reaction centre, L/MFamily
B,
X [auth b]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
X [auth b]		IPR000932Photosystem antenna protein-likeFamily
B,
X [auth b]		IPR017486Photosystem II CP47 reaction centre proteinFamily
C,
Y [auth c]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C,
Y [auth c]		IPR000932Photosystem antenna protein-likeFamily
C,
Y [auth c]		IPR005869Photosystem II CP43 reaction centre proteinFamily
C,
Y [auth c]		IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
D,
Z [auth d]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
D,
Z [auth d]		IPR000484Photosynthetic reaction centre, L/MFamily
D,
Z [auth d]		IPR005868Photosystem II D2 proteinFamily
AA [auth e],
E		IPR013081Photosystem II cytochrome b559, N-terminalDomain
AA [auth e],
E		IPR006217Photosystem II cytochrome b559, alpha subunitFamily
AA [auth e],
E		IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
AA [auth e],
E		IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
AA [auth e],
E		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
BA [auth f],
F		IPR006241Photosystem II cytochrome b559, beta subunitFamily
BA [auth f],
F		IPR013081Photosystem II cytochrome b559, N-terminalDomain
BA [auth f],
F		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
CA [auth h],
G [auth H]		IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
CA [auth h],
G [auth H]		IPR001056Photosystem II reaction centre protein HFamily
DA [auth i],
H [auth I]		IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
DA [auth i],
H [auth I]		IPR003686Photosystem II PsbIFamily
EA [auth j],
I [auth J]		IPR002682Photosystem II PsbJFamily
EA [auth j],
I [auth J]		IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
FA [auth k],
J [auth K]		IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
FA [auth k],
J [auth K]		IPR003687Photosystem II PsbKFamily
GA [auth l],
K [auth L]		IPR003372Photosystem II PsbLFamily
GA [auth l],
K [auth L]		IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
HA [auth m],
L [auth M]		IPR007826Photosystem II PsbMFamily
JA [auth o],
N [auth O]		IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
JA [auth o],
N [auth O]		IPR002628Photosystem II extrinsic protein OFamily
KA [auth q],
O [auth Q]		IPR023222PsbQ-like domain superfamilyHomologous Superfamily
LA [auth t],
P [auth T]		IPR001743Photosystem II PsbTFamily
LA [auth t],
P [auth T]		IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
MA [auth u],
Q [auth U]		IPR010527Photosystem II PsbU, oxygen evolving complexFamily
NA [auth v],
R [auth V]		IPR017851Photosystem II extrinsic protein V, cytochrome c-550 precursorFamily
NA [auth v],
R [auth V]		IPR016003Photosystem II extrinsic protein V, cytochrome c-550 precursor-likeFamily
NA [auth v],
R [auth V]		IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
NA [auth v],
R [auth V]		IPR009056Cytochrome c-like domainDomain
NA [auth v],
R [auth V]		IPR029490Cytochrome c-550 domainDomain
PA [auth x],
T [auth X]		IPR009518Photosystem II PsbXFamily
PA [auth x],
T [auth X]		IPR023431Photosystem II PsbX, type 1 subfamilyFamily
QA [auth y],
U [auth Y]		IPR009388Photosystem II PsbYFamily
RA [auth z],
V [auth Z]		IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
RA [auth z],
V [auth Z]		IPR002644Photosystem II PsbZ, reaction centreFamily
DB [auth 1],
UA [auth 6]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
DB [auth 1],
UA [auth 6]		IPR022796Chlorophyll A-B binding proteinFamily
VA [auth p],
YA [auth P]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
VA [auth p],
YA [auth P]		IPR022796Chlorophyll A-B binding proteinFamily
AB [auth 8],
XA [auth 3]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
AB [auth 8],
XA [auth 3]		IPR022796Chlorophyll A-B binding proteinFamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM