8IT1 | pdb_00008it1

Cryo-EM structure of Crt-SPARTA-gRNA-tDNA tetramer (NADase active form)

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth M]Cullin_ABe8it1M1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Cullin_ABECOD (v294.2)
E [auth I]Cullin_ABe8it1I1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Cullin_ABECOD (v294.2)
C [auth E]Cullin_ABe8it1E1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Cullin_ABECOD (v294.2)
ACullin_ABe8it1A1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Cullin_ABECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B,
D [auth F],
F [auth J],
H [auth N]		PF13676TIR domain (TIR_2)TIR domainThis is a family of Toll-like receptors. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
J [auth L],
L [auth P],
N [auth D],
P [auth H]		RNA (5'-R(P*UP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*UP*GP*UP*AP*UP*AP*GP*U)-3')---
I [auth K],
K [auth O],
M [auth C],
O [auth G]		DNA (45-mer)---
B,
D [auth F],
F [auth J],
H [auth N]		TIR domain-containing protein -
A,
C [auth E],
E [auth I],
G [auth M]		Piwi domain-containing protein - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B,
D [auth F],
F [auth J],
H [auth N]		IPR000157Toll/interleukin-1 receptor homology (TIR) domainDomain
B,
D [auth F],
F [auth J],
H [auth N]		IPR035897Toll/interleukin-1 receptor homology (TIR) domain superfamilyHomologous Superfamily
A,
C [auth E],
E [auth I],
G [auth M]		IPR036397Ribonuclease H superfamilyHomologous Superfamily
A,
C [auth E],
E [auth I],
G [auth M]		IPR012337Ribonuclease H-like superfamilyHomologous Superfamily