Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyUbiquitin-like 8066187 3000157 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyUbiquitin-like 8032202 3000157 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF17978RING/Ubox like zinc-binding domain (zf-RING_14)RING/Ubox like zinc-binding domainThis is a RING zinc finger domain found in parkin proteins. Parkin consists of a ubiquitin-like (Ubl) domain and a 60-amino acid linker followed by RING0 and three additional zinc finger domains characteristic of the RBR family. This entry relates to ...This is a RING zinc finger domain found in parkin proteins. Parkin consists of a ubiquitin-like (Ubl) domain and a 60-amino acid linker followed by RING0 and three additional zinc finger domains characteristic of the RBR family. This entry relates to RING1 zinc binding domain. The RING1 domain displays the C3HC4 cross-brace motif characteristic of RING domains. The N-terminal Ubl domain binds to RING1 [3].
Domain
PF17976RING/Ubox like zinc-binding domain (zf-RING_12)RING/Ubox like zinc-binding domainThis is a RING zinc finger domain found in parkin proteins. Parkin consists of a ubiquitin-like (Ubl) domain and a 60-amino acid linker followed by this domain RING0 and three additional zinc finger domains characteristic of the RBR family. RING0 bin ...This is a RING zinc finger domain found in parkin proteins. Parkin consists of a ubiquitin-like (Ubl) domain and a 60-amino acid linker followed by this domain RING0 and three additional zinc finger domains characteristic of the RBR family. RING0 binds two coordinated zinc atoms at each extremity of the domain with a hairpin. Deletion of RING0 massively derepressed parkin activity supporting the role of RING0 in autoinhibition, point mutations in RING0 (Phe146 to Ala) or RING2 (Phe463 to Ala) both increased parkin activity. The REP (repressor element of parkin) and RING0 domains play a preeminent role in repressing parkin ligase activity through their interactions with RING1 and RING2, respectively [3].
Domain
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E3 ubiquitin-protein ligase parkin
Ubiquitin
E3 ubiquitin-protein ligase parkin

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR002867IBR domainDomain
IPR044066TRIAD supradomainDomain
IPR047535E3 ubiquitin-protein ligase parkin, RING finger, HC subclassDomain
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
IPR041170RING/Ubox-like zinc-binding domainDomain
IPR003977E3 ubiquitin-protein ligase parkinFamily
IPR047534E3 ubiquitin-protein ligase parkin, BRcat domainDomain
IPR047536E3 ubiquitin-protein ligase parkin, Rcat domainDomain
IPR041565Parkin, RING/Ubox like zinc-binding domainDomain
IPR000626Ubiquitin-like domainDomain
IPR031127E3 ubiquitin ligase RBR familyFamily
IPR019954Ubiquitin conserved siteConserved Site
IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
IPR050158Ubiquitin and ubiquitin-likeFamily
IPR000626Ubiquitin-like domainDomain
IPR019956Ubiquitin domainDomain
IPR001975Large ribosomal subunit protein eL40 domainDomain
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
IPR002867IBR domainDomain
IPR044066TRIAD supradomainDomain
IPR047535E3 ubiquitin-protein ligase parkin, RING finger, HC subclassDomain
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
IPR041170RING/Ubox-like zinc-binding domainDomain
IPR003977E3 ubiquitin-protein ligase parkinFamily
IPR047534E3 ubiquitin-protein ligase parkin, BRcat domainDomain
IPR047536E3 ubiquitin-protein ligase parkin, Rcat domainDomain
IPR041565Parkin, RING/Ubox like zinc-binding domainDomain
IPR000626Ubiquitin-like domainDomain
IPR031127E3 ubiquitin ligase RBR familyFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosO60260
PharosP62987
PharosO60260

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
SEP Parent Component: SER

RESIDAA0037

PSI-MOD :  O-phospho-L-serine MOD:00046
SEP Parent Component: SER

RESIDAA0037 , AA0037

PSI-MOD :  O-phospho-L-serine MOD:00046 , O-phospho-L-serine MOD:00046