Annotations: 8IK0

Cryo-EM structure of Stimulator of interferon genes

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	V-set	e8ik0H1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
G [auth E]	V-set	e8ik0E1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
F [auth G]	V-set	e8ik0G1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
E [auth D]	V-set	e8ik0D1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
D [auth F]	V-set	e8ik0F1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
C	V-set	e8ik0C1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
B	V-set	e8ik0B1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
A	IBR	e8ik0A01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: IBR	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth G], G [auth E], H	PF23417	STING transmembrane domain (STING_TM)	STING transmembrane domain	Transmembrane protein 173, also known as stimulator of interferon genes protein (STING), is a transmembrane adaptor protein which is involved in innate immune signalling processes. It induces expression of type I interferons (IFN-alpha and IFN-beta) ...	Transmembrane protein 173, also known as stimulator of interferon genes protein (STING), is a transmembrane adaptor protein which is involved in innate immune signalling processes. It induces expression of type I interferons (IFN-alpha and IFN-beta) via the NF-kappa-B and IRF3, pathways in response to non-self cytosolic RNA and dsDNA [1,2]. It consists of an N-terminal transmembrane (TM) and a C-terminal ligand-binding (LBD, Pfam:PF15009) domains. This entry represents the TM domain which contains a cryptic pocket involved in inter-dimer interactions that mediate the formation of the high-order oligomer [1].	Domain
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth G], G [auth E], H	PF15009	STING ligand-binding domain (STING_LBD)	STING ligand-binding domain	Transmembrane protein 173, also known as stimulator of interferon genes protein (STING), is a transmembrane adaptor protein which is involved in innate immune signalling processes. It induces expression of type I interferons (IFN-alpha and IFN-beta) ...	Transmembrane protein 173, also known as stimulator of interferon genes protein (STING), is a transmembrane adaptor protein which is involved in innate immune signalling processes. It induces expression of type I interferons (IFN-alpha and IFN-beta) via the NF-kappa-B and IRF3, pathways in response to non-self cytosolic RNA and dsDNA [1-4]. It consists of an N-terminal transmembrane (TM) and a C-terminal ligand-binding (LBD) domains. This entry represents the LBD which binds to c-di-GMP [5,6]. Cyclic dinucleotides induce a conformational change to the STING LBD, leading to high-order oligomerization of STING that is essential for triggering the downstream signalling pathways [6].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth G], G [auth E], H	Stimulator of interferon genes protein,Immune protein Tsi3	guanyl nucleotide binding binding cyclic nucleotide binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding nucleoside phosphate binding ion binding cyclic-di-GMP binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding guanyl nucleotide binding binding cyclic nucleotide binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding nucleoside phosphate binding ion binding cyclic-di-GMP binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic cation channel activity passive transmembrane transporter activity monoatomic ion channel activity proton channel activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity cyclic GMP-AMP binding adenyl ribonucleotide binding adenyl nucleotide binding 2',3'-cyclic GMP-AMP binding identical protein binding protein binding protein homodimerization activity protein dimerization activity cation binding metal ion binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly cellular process cellular component organization or biogenesis regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms response to stimulus regulation of response to external stimulus cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly cellular process cellular component organization or biogenesis regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms response to stimulus regulation of response to external stimulus positive regulation of biological process response to biotic stimulus positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of immune response regulation of response to stress response to stress innate immune response regulation of immune system process response to external biotic stimulus positive regulation of immune system process regulation of biological process positive regulation of innate immune response defense response immune response response to other organism regulation of innate immune response biological regulation defense response to symbiont response to external stimulus regulation of response to stimulus immune system process defense response to other organism positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response autophagosome assembly catabolic process organelle assembly vacuole organization macroautophagy autophagy autophagosome organization organelle organization metabolic process process utilizing autophagic mechanism multicellular organismal process regulation of cellular process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process regulation of interferon-beta production interferon-beta production positive regulation of cellular process regulation of biosynthetic process positive regulation of type I interferon production type I interferon production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of interferon-beta production positive regulation of cytokine production regulation of metabolic process regulation of type I interferon production cellular response to stimulus pattern recognition receptor signaling pathway cGAS/STING signaling pathway intracellular signal transduction cell communication immune response-activating signaling pathway signal transduction innate immune response-activating signaling pathway cytoplasmic pattern recognition receptor signaling pathway intracellular receptor signaling pathway signaling immune response-regulating signaling pathway positive regulation of autophagy regulation of catabolic process regulation of autophagy positive regulation of catabolic process regulation of macroautophagy positive regulation of macroautophagy defense response to virus response to virus reticulophagy	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane cytoplasmic vesicle intracellular vesicle vesicle vacuole autophagosome vacuolar membrane autophagosome membrane bounding membrane of organelle Golgi membrane Golgi apparatus endoplasmic reticulum-Golgi intermediate compartment membrane endoplasmic reticulum-Golgi intermediate compartment perinuclear region of cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth G], G [auth E], H	IPR029158	Stimulator of interferon genes protein	Family
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth G], G [auth E], H	IPR055434	STING, transmembrane domain	Domain
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth G], G [auth E], H	IPR047191	Stimulator of interferon genes protein, C-terminal	Domain
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth G], G [auth E], H	IPR038623	Stimulator of interferon genes protein, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth G], G [auth E], H	IPR055432	STING, ligand-binding domain	Domain
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth G], G [auth E], H	IPR053762	Toxin-Substrate Binding Inhibitor	Homologous Superfamily
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth G], G [auth E], H	IPR054004	Type six secretion immunity 3 domain	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D [auth F], E [auth D] A, B, C, D [auth F], E [auth D], F [auth G], G [auth E], H	OPM	Transmembrane	Alpha-helical polytopic	Stimulator of interferon genes (STING)	Stimulator of interferon genes (STING)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D [auth F], E [auth D] A, B, C, D [auth F], E [auth D], F [auth G], G [auth E], H	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D [auth F], E [auth D] A, B, C, D [auth F], E [auth D], F [auth G], G [auth E], H	MemProtMD	Annotated as membrane protein by MemProtMD

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