Annotations: 8I9M

The RAGE and HMGB1 complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	AcetDehyd-dimer	e8i9mB01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: AcetDehyd-dimer	ECOD (v294.2)
A	AcetDehyd-dimer	e8i9mA01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: AcetDehyd-dimer	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF08205	CD80-like C2-set immunoglobulin domain (C2-set_2)	CD80-like C2-set immunoglobulin domain	These domains belong to the immunoglobulin superfamily.	Domain
A	PF00505	HMG (high mobility group) box (HMG_box)	HMG (high mobility group) box		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Advanced glycosylation end product-specific receptor	protein binding binding histone binding amyloid-beta binding peptide binding cargo receptor activity scavenger receptor activity cell adhesion molecule binding laminin receptor activity cell adhesion mediator activity DNA binding nucleic acid binding molecular transducer activity signaling receptor activity protein binding binding histone binding amyloid-beta binding peptide binding cargo receptor activity scavenger receptor activity cell adhesion molecule binding laminin receptor activity cell adhesion mediator activity DNA binding nucleic acid binding molecular transducer activity signaling receptor activity advanced glycation end-product receptor activity protein-containing complex binding molecular adaptor activity identical protein binding transmembrane signaling receptor activity RNA binding S100 protein binding	negative regulation of long-term synaptic potentiation positive regulation of cell communication regulation of cellular process modulation of chemical synaptic transmission signaling positive regulation of biological process negative regulation of biological process cell communication long-term synaptic potentiation synaptic signaling regulation of biological quality positive regulation of cellular process regulation of synaptic plasticity trans-synaptic signaling negative regulation of long-term synaptic potentiation positive regulation of cell communication regulation of cellular process modulation of chemical synaptic transmission signaling positive regulation of biological process negative regulation of biological process cell communication long-term synaptic potentiation synaptic signaling regulation of biological quality positive regulation of cellular process regulation of synaptic plasticity trans-synaptic signaling regulation of biological process regulation of signaling biological regulation cell-cell signaling positive regulation of synaptic transmission chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of long-term synaptic potentiation regulation of cell communication cellular process positive regulation of signaling amyloid precursor protein catabolic process positive regulation of protein metabolic process regulation of protein metabolic process primary metabolic process regulation of amyloid precursor protein catabolic process regulation of macromolecule metabolic process regulation of primary metabolic process positive regulation of metabolic process metabolic process positive regulation of macromolecule metabolic process protein metabolic process macromolecule metabolic process positive regulation of amyloid precursor protein catabolic process amyloid precursor protein metabolic process regulation of metabolic process positive regulation of locomotion regulation of cell motility positive regulation of monocyte extravasation positive regulation of cell migration monocyte extravasation positive regulation of cell motility cellular extravasation myeloid leukocyte migration regulation of cell migration positive regulation of mononuclear cell migration cell migration regulation of immune system process cell motility regulation of mononuclear cell migration positive regulation of immune system process locomotion regulation of leukocyte migration positive regulation of leukocyte migration leukocyte migration immune system process regulation of locomotion mononuclear cell migration regulation of monocyte extravasation regulation of cellular extravasation positive regulation of cellular extravasation localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport regulation of leukocyte differentiation multicellular organismal process cellular developmental process regulation of developmental process cell development mononuclear cell differentiation regulation of cell differentiation regulation of cell development positive regulation of developmental process multicellular organism development positive regulation of hemopoiesis positive regulation of cell differentiation cell differentiation anatomical structure development regulation of multicellular organismal process developmental process regulation of multicellular organismal development hemopoiesis positive regulation of cell development regulation of dendritic cell differentiation regulation of hemopoiesis positive regulation of multicellular organismal process dendritic cell differentiation positive regulation of leukocyte differentiation positive regulation of dendritic cell differentiation leukocyte differentiation interleukin-1 production regulation of interleukin-1 beta production positive regulation of macromolecule biosynthetic process positive regulation of interleukin-1 beta production positive regulation of biosynthetic process regulation of cytokine production cytokine production positive regulation of interleukin-1 production regulation of biosynthetic process regulation of interleukin-1 production gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process interleukin-1 beta production positive regulation of gene expression regulation of macromolecule biosynthetic process positive regulation of cytokine production adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of immune effector process lymphocyte mediated immunity T cell mediated immunity response to stimulus regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains leukocyte mediated immunity regulation of T cell mediated immunity T cell mediated cytotoxicity immune response regulation of adaptive immune response regulation of leukocyte mediated cytotoxicity leukocyte mediated cytotoxicity adaptive immune response immune effector process regulation of T cell mediated cytotoxicity regulation of leukocyte mediated immunity regulation of lymphocyte mediated immunity regulation of response to stimulus regulation of immune response regulation of cell killing cell killing cellular response to stimulus positive regulation of signal transduction regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus positive regulation of JNK cascade regulation of intracellular signal transduction JNK cascade intracellular signaling cassette signal transduction positive regulation of MAPK cascade regulation of JNK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade MAPK cascade regulation of chemokine production chemokine production positive regulation of chemokine production astrocyte differentiation astrocyte activation glial cell development neurogenesis astrocyte development gliogenesis response to stress system development defense response cell activation nervous system development central nervous system development glial cell differentiation glial cell activation inflammatory response neuroinflammatory response DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response DNA repair response to wounding negative regulation of connective tissue replacement involved in inflammatory response wound healing wound healing negative regulation of tissue remodeling connective tissue replacement involved in inflammatory response wound healing wound healing involved in inflammatory response negative regulation of connective tissue replacement regulation of tissue remodeling inflammatory response to wounding tissue remodeling connective tissue replacement regulation of connective tissue replacement negative regulation of multicellular organismal process cellular localization macromolecule localization intracellular protein localization localization within membrane protein localization to membrane response to decreased oxygen levels response to hypoxia response to oxygen levels response to abiotic stimulus positive regulation of cell adhesion regulation of cell adhesion positive regulation of cell-cell adhesion heterotypic cell-cell adhesion cell adhesion cell-cell adhesion positive regulation of heterotypic cell-cell adhesion regulation of cell-cell adhesion regulation of heterotypic cell-cell adhesion system process circulatory system process vascular process in circulatory system vascular transport transport across blood-brain barrier regulation of alpha-beta T cell activation regulation of leukocyte activation regulation of cell activation regulation of T cell activation lymphocyte activation leukocyte activation regulation of CD4-positive, alpha-beta T cell activation T cell activation CD4-positive, alpha-beta T cell activation alpha-beta T cell activation regulation of lymphocyte activation myeloid leukocyte activation macrophage activation leukocyte activation involved in inflammatory response microglial cell activation plasma membrane bounded cell projection organization cell projection organization neuron projection development cellular component organization generation of neurons neuron differentiation neuron development cellular component organization or biogenesis regulation of endothelin production positive regulation of endothelin production endothelin production hexose mediated signaling homeostatic process response to monosaccharide response to carbohydrate carbohydrate homeostasis cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus response to oxygen-containing compound cellular response to glucose stimulus intracellular glucose homeostasis cellular response to oxygen-containing compound response to hexose sugar mediated signaling pathway glucose mediated signaling pathway cellular response to carbohydrate stimulus cellular response to chemical stimulus cellular homeostasis chemical homeostasis response to glucose response to chemical glucose homeostasis carbohydrate mediated signaling regulation of double-strand break repair regulation of cellular response to stress positive regulation of DNA repair regulation of response to stress regulation of nucleobase-containing compound metabolic process double-strand break repair positive regulation of double-strand break repair regulation of DNA repair positive regulation of DNA metabolic process regulation of DNA metabolic process DNA replication positive chemotaxis chemotaxis regulation of response to external stimulus positive regulation of positive chemotaxis response to external stimulus induction of positive chemotaxis regulation of chemotaxis positive regulation of chemotaxis regulation of positive chemotaxis positive regulation of response to external stimulus taxis positive regulation of ERK1 and ERK2 cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production spontaneous synaptic transmission regulation of spontaneous synaptic transmission positive regulation of DNA replication DNA-templated DNA replication positive regulation of DNA-templated DNA replication regulation of DNA-templated DNA replication regulation of DNA replication regulation of interleukin-12 production interleukin-12 production positive regulation of interleukin-12 production regulation of monocyte chemotactic protein-1 production positive regulation of monocyte chemotactic protein-1 production monocyte chemotactic protein-1 production negative regulation of interleukin-10 production interleukin-10 production negative regulation of cellular process regulation of interleukin-10 production negative regulation of macromolecule metabolic process negative regulation of metabolic process negative regulation of cytokine production negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process non-canonical NF-kappaB signal transduction regulation of non-canonical NF-kappaB signal transduction response to nitrogen compound response to amyloid-beta positive regulation of cell population proliferation positive regulation of cell activation lymphocyte proliferation positive regulation of leukocyte activation regulation of leukocyte proliferation cell population proliferation positive regulation of T cell activation positive regulation of lymphocyte proliferation positive regulation of T cell proliferation positive regulation of activated T cell proliferation regulation of cell population proliferation mononuclear cell proliferation regulation of leukocyte cell-cell adhesion positive regulation of leukocyte proliferation regulation of activated T cell proliferation positive regulation of leukocyte cell-cell adhesion leukocyte proliferation leukocyte cell-cell adhesion activated T cell proliferation positive regulation of lymphocyte activation positive regulation of mononuclear cell proliferation T cell proliferation regulation of lymphocyte proliferation regulation of T cell proliferation regulation of mononuclear cell proliferation cell surface receptor signaling pathway regulation of defense response regulation of inflammatory response p38MAPK cascade regulation of p38MAPK cascade transcytosis regulation of system process negative regulation of blood circulation regulation of blood circulation blood circulation behavior learning or memory nervous system process cognition negative regulation of signaling negative regulation of synaptic transmission negative regulation of cell communication negative regulation of long-term synaptic depression long-term synaptic depression regulation of long-term synaptic depression positive regulation of non-canonical NF-kappaB signal transduction positive regulation of p38MAPK cascade regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production cellular response to nitrogen compound cellular response to amyloid-beta	phagocytic cup cell periphery cellular anatomical structure plasma membrane membrane postsynapse synapse cell junction apical part of cell plasma membrane region apical plasma membrane cell surface membrane-bounded organelle intracellular anatomical structure phagocytic cup cell periphery cellular anatomical structure plasma membrane membrane postsynapse synapse cell junction apical part of cell plasma membrane region apical plasma membrane cell surface membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle extracellular region nucleus membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen fibrillar center membraneless organelle nuclear lumen
A	High mobility group protein B1	DNA binding double-stranded DNA binding binding nucleic acid binding supercoiled DNA binding DNA secondary structure binding four-way junction DNA binding bubble DNA binding lipid binding lipopolysaccharide binding carbohydrate derivative binding enzyme regulator activity kinase activator activity enzyme activator activity DNA binding double-stranded DNA binding binding nucleic acid binding supercoiled DNA binding DNA secondary structure binding four-way junction DNA binding bubble DNA binding lipid binding lipopolysaccharide binding carbohydrate derivative binding enzyme regulator activity kinase activator activity enzyme activator activity molecular function activator activity molecular function regulator activity protein kinase activator activity protein kinase regulator activity kinase regulator activity transcription corepressor activity transcription regulator activity transcription coregulator activity transcription factor binding protein binding DNA-binding transcription factor binding calcium-dependent protein kinase regulator activity DNA binding, bending single-stranded DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA binding double-stranded RNA binding modified amino acid binding ion binding anion binding phospholipid binding phosphatidylserine binding small molecule binding chemokine binding C-X-C chemokine binding cytokine binding signaling receptor regulator activity receptor ligand activity signaling receptor activator activity RNA polymerase II-specific DNA-binding transcription factor binding transcription coactivator activity lyase activity catalytic activity single-stranded RNA binding damaged DNA binding cell adhesion molecule binding protein-containing complex binding integrin binding signaling receptor binding cytokine activity RAGE receptor binding chemoattractant activity DNA polymerase binding enzyme binding	multicellular organismal process regulation of cellular process interleukin-1 production positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process regulation of cytokine production cytokine production positive regulation of interleukin-1 production regulation of multicellular organismal process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process multicellular organismal process regulation of cellular process interleukin-1 production positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process regulation of cytokine production cytokine production positive regulation of interleukin-1 production regulation of multicellular organismal process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process regulation of interleukin-1 production biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process immune system development developmental process multicellular organism development immune system process anatomical structure development regulation of immune system process regulation of tolerance induction tolerance induction system development cellular response to stimulus positive regulation of cell communication positive regulation of response to biotic stimulus regulation of toll-like receptor 9 signaling pathway positive regulation of signal transduction pattern recognition receptor signaling pathway response to stimulus regulation of signal transduction response to biotic stimulus intracellular signal transduction cell communication immune response-activating signaling pathway positive regulation of immune response signal transduction positive regulation of immune system process innate immune response-activating signaling pathway positive regulation of pattern recognition receptor signaling pathway immune response response to other organism regulation of innate immune response response to external stimulus positive regulation of intracellular signal transduction regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response toll-like receptor 9 signaling pathway activation of innate immune response regulation of immune response activation of immune response cytoplasmic pattern recognition receptor signaling pathway regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus intracellular receptor signaling pathway signaling regulation of cytoplasmic pattern recognition receptor signaling pathway positive regulation of response to stimulus endolysosomal toll-like receptor signaling pathway positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of intracellular signal transduction regulation of response to stress response to stress innate immune response response to external biotic stimulus positive regulation of toll-like receptor 9 signaling pathway regulation of signaling positive regulation of innate immune response defense response defense response to symbiont regulation of cell communication positive regulation of signaling cellular component organization organelle organization DNA geometric change chromosome organization DNA conformation change cellular component organization or biogenesis catabolic process autophagy process utilizing autophagic mechanism regulation of leukocyte differentiation cellular developmental process regulation of developmental process cell development mononuclear cell differentiation regulation of cell differentiation regulation of cell development positive regulation of developmental process positive regulation of hemopoiesis positive regulation of cell differentiation cell differentiation regulation of multicellular organismal development hemopoiesis positive regulation of cell development regulation of dendritic cell differentiation regulation of hemopoiesis dendritic cell differentiation positive regulation of leukocyte differentiation positive regulation of dendritic cell differentiation leukocyte differentiation adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte activation lymphocyte differentiation cell activation involved in immune response CD4-positive, alpha-beta T cell differentiation leukocyte activation alpha-beta T cell differentiation T cell activation involved in immune response alpha-beta T cell activation involved in immune response T cell activation CD4-positive, alpha-beta T cell activation leukocyte activation involved in immune response alpha-beta T cell activation T cell differentiation lymphocyte activation involved in immune response T-helper cell differentiation cell activation T cell differentiation involved in immune response T-helper 1 type immune response adaptive immune response immune effector process T-helper 1 cell differentiation positive regulation of interleukin-8 production interleukin-8 production regulation of interleukin-8 production negative regulation of transcription initiation by RNA polymerase II transcription preinitiation complex assembly negative regulation of biological process regulation of primary metabolic process negative regulation of RNA biosynthetic process cellular component biogenesis nucleobase-containing compound metabolic process DNA-templated transcription regulation of DNA-templated transcription initiation regulation of RNA metabolic process cellular component assembly transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process transcription initiation at RNA polymerase II promoter regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of cellular component organization negative regulation of transcription by RNA polymerase II negative regulation of metabolic process primary metabolic process negative regulation of protein-containing complex assembly negative regulation of macromolecule biosynthetic process RNA polymerase II preinitiation complex assembly regulation of DNA-templated transcription negative regulation of RNA metabolic process regulation of RNA polymerase II transcription preinitiation complex assembly regulation of cellular component organization negative regulation of RNA polymerase II transcription preinitiation complex assembly RNA metabolic process protein-DNA complex organization RNA biosynthetic process nucleic acid biosynthetic process regulation of protein-containing complex assembly protein-containing complex assembly negative regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process protein-containing complex organization protein-DNA complex assembly nucleobase-containing compound biosynthetic process regulation of cellular component biogenesis DNA-templated transcription initiation nucleic acid metabolic process negative regulation of biosynthetic process regulation of transcription initiation by RNA polymerase II negative regulation of DNA-templated transcription initiation cell population proliferation positive regulation of cell population proliferation endothelial cell proliferation positive regulation of epithelial cell proliferation regulation of vascular endothelial cell proliferation regulation of endothelial cell proliferation regulation of cell population proliferation positive regulation of endothelial cell proliferation regulation of epithelial cell proliferation vascular endothelial cell proliferation epithelial cell proliferation positive regulation of vascular endothelial cell proliferation interleukin-10 production regulation of interleukin-10 production positive regulation of interleukin-10 production regulation of type II interferon production type II interferon production negative regulation of type II interferon production negative regulation of cytokine production negative regulation of gene expression negative regulation of multicellular organismal process positive regulation of viral life cycle positive regulation of viral process viral life cycle modulation by symbiont of entry into host biological process involved in interaction with host biological process involved in symbiotic interaction regulation of viral entry into host cell regulation of viral life cycle regulation of viral process symbiont entry into host cell viral process symbiont entry into host positive regulation of viral entry into host cell positive regulation by symbiont of entry into host regulation of biological process involved in symbiotic interaction localization import into cell transport phagocytosis apoptotic cell clearance endocytosis establishment of localization vesicle-mediated transport positive regulation of autophagy regulation of catabolic process regulation of autophagy positive regulation of catabolic process interferon-alpha production regulation of interferon-alpha production positive regulation of type I interferon production type I interferon production positive regulation of interferon-alpha production regulation of type I interferon production myeloid cell differentiation immune response-regulating cell surface receptor signaling pathway cell surface toll-like receptor signaling pathway immune response-activating cell surface receptor signaling pathway regulation of toll-like receptor 4 signaling pathway positive regulation of toll-like receptor 4 signaling pathway innate immune response activating cell surface receptor signaling pathway cell surface pattern recognition receptor signaling pathway cell surface receptor signaling pathway toll-like receptor 4 signaling pathway positive regulation of ERK1 and ERK2 cascade intracellular signaling cassette positive regulation of MAPK cascade regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade lymphocyte mediated immunity regulation of immune effector process T cell mediated immunity immune response to tumor cell regulation of response to tumor cell T cell mediated immune response to tumor cell regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of T cell mediated immune response to tumor cell leukocyte mediated immunity regulation of T cell mediated immunity response to tumor cell regulation of adaptive immune response regulation of immune response to tumor cell regulation of leukocyte mediated immunity regulation of lymphocyte mediated immunity regulation of localization negative regulation of transport negative regulation of endocytosis negative regulation of phagocytosis regulation of endocytosis regulation of transport regulation of phagocytosis regulation of vesicle-mediated transport negative regulation of apoptotic cell clearance regulation of apoptotic cell clearance regulation of myeloid cell differentiation positive regulation of myeloid cell differentiation regulation of interleukin-12 production interleukin-12 production positive regulation of interleukin-12 production regulation of interferon-beta production interferon-beta production positive regulation of interferon-beta production DNA recombination DNA metabolic process carbohydrate metabolic process glucan catabolic process energy derivation by oxidation of organic compounds glycogen metabolic process carbohydrate catabolic process generation of precursor metabolites and energy macromolecule catabolic process polysaccharide metabolic process glucan metabolic process glycogen catabolic process polysaccharide catabolic process energy reserve metabolic process myeloid progenitor cell differentiation hematopoietic progenitor cell differentiation positive regulation of locomotion regulation of cell motility regulation of blood vessel endothelial cell migration endothelial cell migration positive regulation of cell migration positive regulation of blood vessel endothelial cell migration regulation of locomotion positive regulation of endothelial cell migration positive regulation of cell motility regulation of cell migration blood vessel endothelial cell migration regulation of endothelial cell migration cell migration cell motility locomotion regulation of cellular response to stress cellular response to stress nucleotide-excision repair DNA repair regulation of DNA repair DNA damage response regulation of nucleotide-excision repair regulation of DNA metabolic process chromatin organization chromatin remodeling heterochromatin formation epigenetic regulation of gene expression heterochromatin organization negative regulation of gene expression, epigenetic regulation of non-canonical NF-kappaB signal transduction non-canonical NF-kappaB signal transduction positive regulation of non-canonical NF-kappaB signal transduction regulation of sprouting angiogenesis angiogenesis regulation of vasculature development tube morphogenesis positive regulation of sprouting angiogenesis regulation of anatomical structure morphogenesis blood vessel development blood vessel morphogenesis tube development positive regulation of angiogenesis sprouting angiogenesis vasculature development circulatory system development anatomical structure morphogenesis positive regulation of vasculature development regulation of angiogenesis anatomical structure formation involved in morphogenesis myeloid dendritic cell activation myeloid leukocyte activation inflammatory response regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production homeostatic process neutrophil clearance neutrophil homeostasis multicellular organismal-level homeostasis leukocyte homeostasis homeostasis of number of cells myeloid cell homeostasis regulation of molecular function positive regulation of molecular function regulation of DNA binding regulation of binding positive regulation of binding positive regulation of DNA binding positive regulation of response to wounding wound healing regulation of response to wounding positive regulation of wound healing regulation of wound healing response to wounding monosaccharide metabolic process regulation of generation of precursor metabolites and energy regulation of polysaccharide metabolic process positive regulation of glycogen metabolic process regulation of small molecule metabolic process regulation of glycogen catabolic process small molecule metabolic process positive regulation of glycogen catabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process regulation of carbohydrate catabolic process hexose metabolic process positive regulation of glucose metabolic process positive regulation of carbohydrate metabolic process positive regulation of small molecule metabolic process regulation of glycogen metabolic process glucose metabolic process positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death DNA topological change regulation of interleukin-1 beta production positive regulation of interleukin-1 beta production interleukin-1 beta production chemokine (C-X-C motif) ligand 2 production regulation of chemokine (C-X-C motif) ligand 2 production positive regulation of chemokine (C-X-C motif) ligand 2 production regulation of chemokine production chemokine production positive regulation of chemokine production positive regulation of JNK cascade JNK cascade regulation of JNK cascade macrophage activation involved in immune response myeloid cell activation involved in immune response macrophage activation cell chemotaxis chemotaxis dendritic cell chemotaxis leukocyte migration dendritic cell migration cellular response to chemical stimulus taxis response to chemical mononuclear cell migration leukocyte chemotaxis negative regulation of locomotion negative regulation of endothelial cell migration negative regulation of blood vessel endothelial cell migration negative regulation of cell motility negative regulation of cell migration inflammatory response to antigenic stimulus positive regulation of monocyte chemotaxis positive regulation of chemotaxis regulation of monocyte chemotaxis myeloid leukocyte migration positive regulation of mononuclear cell migration regulation of mononuclear cell migration regulation of leukocyte chemotaxis regulation of leukocyte migration positive regulation of leukocyte migration positive regulation of leukocyte chemotaxis regulation of chemotaxis monocyte chemotaxis base-excision repair mismatch repair positive regulation of mismatch repair positive regulation of DNA repair positive regulation of DNA metabolic process regulation of mismatch repair positive regulation of DNA-templated transcription positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of myeloid progenitor cell differentiation positive regulation of myeloid progenitor cell differentiation regulation of hematopoietic progenitor cell differentiation positive regulation of hematopoietic progenitor cell differentiation plasma membrane bounded cell projection organization cell projection organization neuron projection development nervous system development generation of neurons neurogenesis neuron differentiation neuron development positive regulation of cytosolic calcium ion concentration regulation of biological quality endothelial cell chemotaxis plasmacytoid dendritic cell activation interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production regulation of toll-like receptor 2 signaling pathway positive regulation of toll-like receptor 2 signaling pathway toll-like receptor 2 signaling pathway animal organ development respiratory tube development lung development respiratory system development response to lipid cellular response to lipopolysaccharide response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound cellular response to biotic stimulus response to bacterium cellular response to lipid response to molecule of bacterial origin regulation of monocyte chemotactic protein-1 production positive regulation of monocyte chemotactic protein-1 production monocyte chemotactic protein-1 production response to corticosteroid response to hormone response to steroid hormone response to endogenous stimulus response to glucocorticoid regulation of alpha-beta T cell activation regulation of leukocyte activation regulation of cell activation negative regulation of cell adhesion negative regulation of T cell differentiation negative regulation of hemopoiesis negative regulation of leukocyte differentiation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion negative regulation of CD4-positive, alpha-beta T cell activation negative regulation of cell-cell adhesion negative regulation of lymphocyte differentiation regulation of leukocyte cell-cell adhesion negative regulation of CD4-positive, alpha-beta T cell differentiation negative regulation of leukocyte activation regulation of CD4-positive, alpha-beta T cell differentiation regulation of alpha-beta T cell differentiation negative regulation of alpha-beta T cell differentiation negative regulation of lymphocyte activation leukocyte cell-cell adhesion regulation of T cell differentiation cell adhesion cell-cell adhesion negative regulation of cell differentiation regulation of cell-cell adhesion regulation of lymphocyte differentiation negative regulation of developmental process regulation of cell adhesion regulation of T cell activation negative regulation of cell activation negative regulation of cell development regulation of CD4-positive, alpha-beta T cell activation negative regulation of immune system process negative regulation of alpha-beta T cell activation regulation of lymphocyte activation positive regulation of cell activation lymphocyte proliferation positive regulation of leukocyte activation regulation of leukocyte proliferation positive regulation of T cell activation positive regulation of lymphocyte proliferation positive regulation of T cell proliferation positive regulation of activated T cell proliferation mononuclear cell proliferation positive regulation of leukocyte proliferation regulation of activated T cell proliferation positive regulation of leukocyte cell-cell adhesion leukocyte proliferation activated T cell proliferation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of mononuclear cell proliferation T cell proliferation regulation of lymphocyte proliferation positive regulation of cell adhesion regulation of T cell proliferation regulation of mononuclear cell proliferation sensory organ development eye development visual system development sensory system development T-helper 1 cell activation double-strand break repair response to peptide response to interleukin-7 response to cytokine cellular response to cytokine stimulus cellular response to interleukin-7 double-strand break repair via nonhomologous end joining somatic cell DNA recombination V(D)J recombination somatic diversification of immune receptors via germline recombination within a single locus somatic diversification of immune receptors	cell periphery protein-containing complex cellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex alphav-beta3 integrin-HMGB1 complex cell surface extracellular region membrane-bounded organelle vesicle lumen intracellular anatomical structure intracellular vesicle cell periphery protein-containing complex cellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex alphav-beta3 integrin-HMGB1 complex cell surface extracellular region membrane-bounded organelle vesicle lumen intracellular anatomical structure intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen secretory granule lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen intracellular organelle cytoplasmic vesicle organelle lumen organelle secretory granule secretory vesicle cytoplasm vesicle cell projection neuron projection plasma membrane bounded cell projection endoplasmic reticulum-Golgi intermediate compartment membraneless organelle intracellular membraneless organelle chromosome condensed chromosome ficolin-1-rich granule ficolin-1-rich granule lumen nucleus nucleoplasm nuclear lumen early endosome endosome transcription regulator complex transcription repressor complex endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
B	IPR003599	Immunoglobulin domain subtype	Domain
B	IPR003006	Immunoglobulin/major histocompatibility complex, conserved site	Conserved Site
B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B	IPR007110	Immunoglobulin-like domain	Domain
B	IPR003598	Immunoglobulin subtype 2	Domain
B	IPR051116	Cell Surface Receptors and Adhesion Molecules	Family
B	IPR013162	CD80-like, immunoglobulin C2-set	Domain
A	IPR036910	High mobility group box domain superfamily	Homologous Superfamily
A	IPR050342	High Mobility Group Box (HMGB)	Family
A	IPR017967	HMG box A DNA-binding domain, conserved site	Conserved Site
A	IPR009071	High mobility group box domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	: Q15109	rheumatoid arthritis hyperglycemia neuralgia Inflammation atherosclerosis Lewy body dementia lung carcinoma diabetic peripheral angiopathy prostate carcinoma inborn carbohydrate metabolic disorder squamous cell lung carcinoma lung adenocarcinoma malignant glioma membranous glomerulonephritis age-related macular degeneration rheumatoid arthritis hyperglycemia neuralgia Inflammation atherosclerosis Lewy body dementia lung carcinoma diabetic peripheral angiopathy prostate carcinoma inborn carbohydrate metabolic disorder squamous cell lung carcinoma lung adenocarcinoma malignant glioma membranous glomerulonephritis age-related macular degeneration autism spectrum disorder chronic obstructive pulmonary disease osteoarthritis osteosarcoma hepatitis B virus infection psoriasis sarcoidosis systemic lupus erythematosus lung cancer malignant mesothelioma ulcerative colitis colorectal cancer osteoarthritis susceptibility 1 glioblastoma pancreas disease psoriatic arthritis schizophrenia systemic sclerosis wet macular degeneration arteriosclerosis disorder atopic eczema cervical cancer non-small cell lung carcinoma heart disease
A	: P09429	esophageal squamous cell carcinoma Inflammation pulmonary fibrosis extrahepatic cholestasis neuropathy, painful neuralgia leukostasis myocardial infarction gestational trophoblastic neoplasm ovarian cancer lung adenocarcinoma rheumatoid arthritis acute lymphoblastic leukemia Burkitt lymphoma myocardial ischemia esophageal squamous cell carcinoma Inflammation pulmonary fibrosis extrahepatic cholestasis neuropathy, painful neuralgia leukostasis myocardial infarction gestational trophoblastic neoplasm ovarian cancer lung adenocarcinoma rheumatoid arthritis acute lymphoblastic leukemia Burkitt lymphoma myocardial ischemia pancreatic ductal adenocarcinoma psoriasis juvenile idiopathic arthritis bone osteosarcoma mycosis fungoides coronary artery disease idiopathic interstitial pneumonia psoriatic arthritis multiple organ dysfunction syndrome breast cancer drug-induced liver injury

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.