Annotations: 8H3A

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth E]	SCOP2B Superfamily	JAB1/MPN domain-like	8053263	3001105	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	TPR-like	8057036	3001345	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Winged helix DNA-binding domain	8057039	3000034	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	TPR-like	8057037	3001345	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	JAB1/MPN domain-like	8053244	3001105	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	EIF3 subunit F C-terminal domain-like	8053243	3002167	SCOP2B (2022-06-29)
J [auth L]	SCOP2B Superfamily	Cullin repeat-like	8084778	3000059	SCOP2B (2022-06-29)
L [auth R]	SCOP2B Superfamily	RING/U-box like	8040866	3000160	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth E]	PF01398	e8h3aE2	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF01398	ECOD (1.6)
A [auth E]	PF18323	e8h3aE1	A: extended segments	X: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)	H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)	T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain	F: PF18323	ECOD (1.6)
B [auth A]	PF01399	e8h3aA3	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF01399	ECOD (1.6)
B [auth A]	PF10602	e8h3aA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF10602	ECOD (1.6)
B [auth A]	PF21151	e8h3aA2	A: extended segments	X: 26S proteasome regulatory subunits C-terminal helices	H: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology)	T: 26S proteasome regulatory subunit RPN7 C-terminal helix	F: PF21151	ECOD (1.6)
C [auth B]	PF01399	e8h3aB2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF01399	ECOD (1.6)
C [auth B]	F_UNCLASSIFIED	e8h3aB3	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: F_UNCLASSIFIED	ECOD (1.6)
C [auth B]	F_UNCLASSIFIED	e8h3aB1	A: extended segments	X: 26S proteasome regulatory subunits C-terminal helices	H: 26S proteasome regulatory subunit RPN9 C-terminal helix (From Topology)	T: 26S proteasome regulatory subunit RPN9 C-terminal helix	F: F_UNCLASSIFIED	ECOD (1.6)
D [auth C]	PF01399,PF22788	e8h3aC3	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF01399,PF22788	ECOD (1.6)
D [auth C]	PF22788	e8h3aC2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF22788	ECOD (1.6)
D [auth C]	PF21215	e8h3aC1	A: extended segments	X: 26S proteasome regulatory subunits C-terminal helices	H: 26S proteasome regulatory subunit RPN3 C-terminal helix (From Topology)	T: 26S proteasome regulatory subunit RPN3 C-terminal helix	F: PF21215	ECOD (1.6)
F	PF01398	e8h3aF1	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF01398	ECOD (1.6)
F	PF13012	e8h3aF2	A: extended segments	X: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)	H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)	T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain	F: PF13012	ECOD (1.6)
G	PF01399	e8h3aG2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF01399	ECOD (1.6)
G	PF22061	e8h3aG1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF22061	ECOD (1.6)
G	PF18392	e8h3aG3	A: extended segments	X: 26S proteasome regulatory subunits C-terminal helices	H: 26S proteasome regulatory subunit RPN9 C-terminal helix (From Topology)	T: 26S proteasome regulatory subunit RPN9 C-terminal helix	F: PF18392	ECOD (1.6)
H	PF10075	e8h3aH2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF10075	ECOD (1.6)
H	PF10075	e8h3aH1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF10075	ECOD (1.6)
J [auth L]	PF00888	e8h3aL5	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF00888	ECOD (1.6)
J [auth L]	PF10557	e8h3aL2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF10557	ECOD (1.6)
J [auth L]	PF00888	e8h3aL4	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF00888	ECOD (1.6)
J [auth L]	PF00888	e8h3aL1	A: a+b duplicates or obligate multimers	X: a+b domain in cullin-like proteins (From Topology)	H: a+b domain in cullin-like proteins (From Topology)	T: a+b domain in cullin-like proteins	F: PF00888	ECOD (1.6)
L [auth R]	PF12678	e8h3aR1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: RING/U-box	F: PF12678	ECOD (1.6)
E [auth D]	PF01399	e8h3aD3	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF01399	ECOD (1.6)
E [auth D]	PF22241	e8h3aD2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: PF22241	ECOD (1.6)
E [auth D]	PF18420	e8h3aD1	A: extended segments	X: 26S proteasome regulatory subunits C-terminal helices	H: 26S proteasome regulatory subunit RPN5 C-terminal helix (From Topology)	T: 26S proteasome regulatory subunit RPN5 C-terminal helix	F: PF18420	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E]	PF18323	Cop9 signalosome subunit 5 C-terminal domain (CSN5_C)	Cop9 signalosome subunit 5 C-terminal domain	The COP9 (Constitutive photomorphogenesis 9) signalosome (CSN), a large multiprotein complex that resembles the 19S lid of the 26S proteasome, plays a central role in the regulation of the E3-cullin RING ubiquitin ligases (CRLs) [1]. The catalytic ac ...	The COP9 (Constitutive photomorphogenesis 9) signalosome (CSN), a large multiprotein complex that resembles the 19S lid of the 26S proteasome, plays a central role in the regulation of the E3-cullin RING ubiquitin ligases (CRLs) [1]. The catalytic activity of the CSN complex is carried by subunit 5 (CSN5), also known as c-Jun activation domain-binding protein-1 (Jab1) [1]. This entry is the C-terminal domain found in CSN5 proteins. CSN5, whose two C-terminal helices form an antiparallel hairpin, inserts its final C-terminal helix (helix II) into the central CSN6 framework at the core of the bundle. Deletion of the C-terminal helices has a pronounced effect on CSN integrity [2].	Domain
A [auth E]	PF01398	JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	-	Family
B [auth A]	PF21151	COP9 signalosome complex subunit 1, C-terminal helix (CSN1_C)	COP9 signalosome complex subunit 1, C-terminal helix	This is the C-terminal helix from COP9 signalosome complex subunit 1, an essential component of the COP9 signalosome complex (CSN), which involved in various cellular and developmental processes [1,2].	Domain
B [auth A]	PF01399	PCI domain (PCI)	PCI domain	This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].	Domain
B [auth A]	PF10602	26S proteasome subunit RPN7 (RPN7)	26S proteasome subunit RPN7	-	Repeat
C [auth B]	PF01399	PCI domain (PCI)	PCI domain	This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].	Domain
D [auth C]	PF21215	COP9 signalosome complex subunit 3-like, C-terminal helix (CSN3-like_C)	COP9 signalosome complex subunit 3-like, C-terminal helix	This domain is found in COP9 signalosome complex subunit 3 from humans (CSN3) and similar proteins predominantly found in vertebrates. CSN3 is a component of the eight-subunit COP9 signalosome complex (CSN), which inactivate Cullin-RING E3 ubiquitin ...	This domain is found in COP9 signalosome complex subunit 3 from humans (CSN3) and similar proteins predominantly found in vertebrates. CSN3 is a component of the eight-subunit COP9 signalosome complex (CSN), which inactivate Cullin-RING E3 ubiquitin ligases (CRLs) by removing their covalently attached activator, NEDD8. This entry represents the C-terminal helical decoration of this protein [1,2].	Domain
D [auth C]	PF01399	PCI domain (PCI)	PCI domain	This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].	Domain
F	PF13012	Maintenance of mitochondrial structure and function (MitMem_reg)	Maintenance of mitochondrial structure and function	-	Family
F	PF01398	JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	-	Family
G	PF18392	COP9 signalosome complex subunit 7a helix I domain (CSN7a_helixI)	COP9 signalosome complex subunit 7a helix I domain	This is The C-terminal helix I domain found in COP9 signalosome complex subunit 7a. The helix from CSN7 (helix I) contacts CSN6 helices I and II at the base of the bundle, nearest the PCI ring [1].	Domain
G	PF01399	PCI domain (PCI)	PCI domain	This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].	Domain
H	PF10075	CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)	CSN8/PSMD8/EIF3K family	-	Family
I, K [auth M]	PF07707	BTB And C-terminal Kelch (BACK)	BTB And C-terminal Kelch	This domain is found associated with Pfam:PF00651 and Pfam:PF01344 [1]. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues [1]. This family appears to be closely related to the BTB domain (Finn RD ...	This domain is found associated with Pfam:PF00651 and Pfam:PF01344 [1]. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues [1]. This family appears to be closely related to the BTB domain (Finn RD, personal observation).	Domain
I, K [auth M]	PF00651	BTB/POZ domain (BTB)	BTB/POZ domain	The BTB (for BR-C, ttk and bab) [1] or POZ (for Pox virus and Zinc finger) [2] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family o ...	The BTB (for BR-C, ttk and bab) [1] or POZ (for Pox virus and Zinc finger) [2] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [2]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [3]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [4,5,6]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.	Domain
I, K [auth M]	PF01344	Kelch motif (Kelch_1)	Kelch motif	-	Repeat
J [auth L]	PF00888	Cullin family (Cullin)	Cullin family	-	Repeat
J [auth L]	PF10557	Cullin protein neddylation domain (Cullin_Nedd8)	Cullin protein neddylation domain	This is the neddylation site of cullin proteins which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cu ...	This is the neddylation site of cullin proteins which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae, and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue [1].	Domain
L [auth R]	PF12678	RING-H2 zinc finger domain (zf-rbx1)	RING-H2 zinc finger domain	There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell ...	There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control [1].	Domain
E [auth D]	PF18420	CSN4/RPN5/eIF3a helix turn helix domain (CSN4_RPN5_eIF3a)	CSN4/RPN5/eIF3a helix turn helix domain	Cullin-RING E3 ubiquitin ligases (CRLs) are regulated by the eight-subunit COP9 signalosome (CSN). Enzymatically, CSN functions as an isopeptidase that removes the ubiquitin-like activator NEDD8 from CRLs, but it can also bind deneddylated CRLs and m ...	Cullin-RING E3 ubiquitin ligases (CRLs) are regulated by the eight-subunit COP9 signalosome (CSN). Enzymatically, CSN functions as an isopeptidase that removes the ubiquitin-like activator NEDD8 from CRLs, but it can also bind deneddylated CRLs and maintain them in an inactive state. The CSN subunits CSN1, CSN2, CSN3, CSN4, CSN7 and CSN8, share a common domain composition: an N-terminal array of tandem alpha-helical tetratricopeptide/-like repeats, a 34 residue motif, followed by a PCI domain, which encompasses a WH subdomain, a linker, and one or two alpha-helices at the C-terminus. This entry describes the C-terminal helices found on CSN4. The two helices from CSN4 (helices I and II) form a brace roughly perpendicular to the bundle axis in contact with the three C-terminal helices of CSN6. CSN5, whose two C-terminal helices form an antiparallel hairpin, inserts its final C-terminal helix (helix II) into the central CSN6 framework at the core of the bundle. Both CSN1 and CSN4 are dependent on the presence of their C-terminal helix (CSN1 isoform-2 residues: 466-527; and CSN4: 364-406) for integration into CSN. COP9 signalosome shares common architecture with the 26S proteasome lid and eIF3 where the 19S lid subunit RPN5 and the eIF3 core subunit eIF3a share significant structural similarity with CSN4 [1].	Domain
E [auth D]	PF01399	PCI domain (PCI)	PCI domain	This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E]	COP9 signalosome complex subunit 5	translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity ubiquitin-like protein peptidase activity deNEDDylase activity translation regulator activity binding organic cyclic compound binding translation regulator activity, nucleic acid binding nucleic acid binding translation initiation factor activity translation factor activity, RNA binding peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity ubiquitin-like protein peptidase activity deNEDDylase activity transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity metal-dependent deubiquitinase activity deubiquitinase activity protein binding enzyme binding macrophage migration inhibitory factor binding cytokine binding cation binding ion binding metal ion binding small molecule binding	cellular response to stimulus response to organic substance regulation of cellular process response to stimulus signaling regulation of cellular response to stress endoplasmic reticulum unfolded protein response regulation of response to endoplasmic reticulum stress regulation of signal transduction cell communication regulation of endoplasmic reticulum unfolded protein response cellular response to stress response to stress regulation of response to stress cellular response to stimulus response to organic substance regulation of cellular process response to stimulus signaling regulation of cellular response to stress endoplasmic reticulum unfolded protein response regulation of response to endoplasmic reticulum stress regulation of signal transduction cell communication regulation of endoplasmic reticulum unfolded protein response cellular response to stress response to stress regulation of response to stress signal transduction cellular response to organic substance regulation of IRE1-mediated unfolded protein response response to endoplasmic reticulum stress regulation of biological process regulation of signaling cellular response to topologically incorrect protein biological regulation cellular response to unfolded protein response to unfolded protein cellular response to chemical stimulus regulation of response to stimulus response to chemical response to topologically incorrect protein IRE1-mediated unfolded protein response regulation of cell communication cellular process regulation of JNK cascade regulation of MAPK cascade intracellular signal transduction regulation of intracellular signal transduction JNK cascade intracellular signaling cassette MAPK cascade negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death positive regulation of DNA-binding transcription factor activity cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process positive regulation of molecular function nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process cellular metabolic process primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process regulation of molecular function organic cyclic compound metabolic process regulation of gene expression biosynthetic process regulation of DNA-binding transcription factor activity organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process organonitrogen compound metabolic process macromolecule modification protein metabolic process post-translational protein modification protein modification process protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal regulation of protein modification process regulation of post-translational protein modification regulation of protein metabolic process regulation of protein neddylation regulation of protein modification by small protein conjugation or removal protein deubiquitination protein modification by small protein removal cell cycle regulation of cell cycle protein deneddylation exosomal secretion vesicle localization establishment of organelle localization cellular localization transport secretion establishment of vesicle localization export from cell establishment of localization extracellular exosome biogenesis vesicle-mediated transport cellular component biogenesis localization secretion by cell exocytosis extracellular vesicle biogenesis organelle localization establishment of localization in cell cellular component organization or biogenesis proteolysis positive regulation of macromolecule biosynthetic process positive regulation of metabolic process transcription by RNA polymerase II positive regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of cellular process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process organonitrogen compound biosynthetic process translation	eukaryotic translation initiation factor 3 complex protein-containing complex intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular organelle organelle nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle membrane-enclosed lumen eukaryotic translation initiation factor 3 complex protein-containing complex intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular organelle organelle nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-DNA complex intracellular non-membrane-bounded organelle chromatin chromosome non-membrane-bounded organelle perinuclear region of cytoplasm transport vesicle synapse intracellular vesicle endomembrane system presynapse cytoplasmic vesicle synaptic vesicle cell junction secretory vesicle vesicle exocytic vesicle
B [auth A]	COP9 signalosome complex subunit 1	GTPase regulator activity enzyme regulator activity GTPase inhibitor activity molecular function inhibitor activity nucleoside-triphosphatase regulator activity molecular function regulator activity enzyme inhibitor activity	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication JNK cascade intracellular signaling cassette MAPK cascade cellular process signal transduction organonitrogen compound metabolic process cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication JNK cascade intracellular signaling cassette MAPK cascade cellular process signal transduction organonitrogen compound metabolic process primary metabolic process organic substance metabolic process macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal protein deneddylation protein modification by small protein removal regulation of protein modification process regulation of post-translational protein modification regulation of protein metabolic process regulation of macromolecule metabolic process regulation of primary metabolic process regulation of protein neddylation regulation of protein modification by small protein conjugation or removal regulation of metabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
C [auth B]	COP9 signalosome complex subunit 2	transcription corepressor activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity	developmental process multicellular organismal process cell population proliferation developmental growth chordate embryonic development growth embryo development trophectodermal cell proliferation in utero embryonic development multicellular organism development embryo development ending in birth or egg hatching anatomical structure development cellular process blastocyst growth developmental process multicellular organismal process cell population proliferation developmental growth chordate embryonic development growth embryo development trophectodermal cell proliferation in utero embryonic development multicellular organism development embryo development ending in birth or egg hatching anatomical structure development cellular process blastocyst growth blastocyst development protein phosphorylation organonitrogen compound metabolic process phosphorylation cellular metabolic process primary metabolic process organic substance metabolic process macromolecule modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process cellular biosynthetic process RNA metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription organic cyclic compound metabolic process nucleic acid biosynthetic process transcription by RNA polymerase II biosynthetic process organic cyclic compound biosynthetic process organic substance biosynthetic process post-translational protein modification protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal regulation of cellular process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription regulation of biological process negative regulation of transcription by RNA polymerase II negative regulation of metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of gene expression negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process negative regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process biological regulation regulation of macromolecule metabolic process regulation of cellular biosynthetic process negative regulation of biosynthetic process protein deneddylation protein modification by small protein removal cellular developmental process nervous system development generation of neurons neurogenesis neuron differentiation cell differentiation system development regulation of protein modification process regulation of post-translational protein modification regulation of protein metabolic process regulation of protein neddylation regulation of protein modification by small protein conjugation or removal skeletal muscle cell differentiation skeletal muscle tissue development animal organ development tissue development muscle structure development skeletal muscle organ development muscle tissue development muscle organ development cellular response to stimulus response to stimulus signaling signal transduction cell communication inner cell mass cell proliferation	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
D [auth C]	COP9 signalosome complex subunit 3	-	organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process organic substance metabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process protein metabolic process organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process organic substance metabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process metabolic process protein metabolic process macromolecule metabolic process organic substance catabolic process response to light stimulus response to stimulus response to radiation response to abiotic stimulus macromolecule modification post-translational protein modification protein modification process protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal protein deneddylation protein modification by small protein removal regulation of biological process regulation of protein modification process regulation of post-translational protein modification regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process regulation of primary metabolic process regulation of protein neddylation regulation of protein modification by small protein conjugation or removal regulation of metabolic process cellular response to stimulus regulation of cellular process signaling cellular process signal transduction cell communication developmental process multicellular organism development multicellular organismal process embryo development ending in birth or egg hatching chordate embryonic development anatomical structure development embryo development in utero embryonic development DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator regulation of cellular response to stress regulation of signal transduction DNA damage response, signal transduction by p53 class mediator intracellular signal transduction cellular response to stress regulation of intracellular signal transduction response to stress regulation of response to stress regulation of signal transduction by p53 class mediator regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator regulation of DNA damage response, signal transduction by p53 class mediator regulation of signaling signal transduction by p53 class mediator DNA damage response, signal transduction resulting in transcription regulation of response to stimulus DNA damage response regulation of cell communication signal transduction in response to DNA damage	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol perinuclear region of cytoplasm membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle membrane-enclosed lumen intracellular anatomical structure cytoplasm cellular anatomical entity cytosol perinuclear region of cytoplasm membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
F	COP9 signalosome complex subunit 6	-	organonitrogen compound metabolic process primary metabolic process organic substance metabolic process macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal protein deneddylation protein modification by small protein removal organonitrogen compound metabolic process primary metabolic process organic substance metabolic process macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal protein deneddylation protein modification by small protein removal regulation of biological process regulation of protein modification process regulation of post-translational protein modification regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process regulation of primary metabolic process regulation of protein neddylation regulation of protein modification by small protein conjugation or removal regulation of metabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol perinuclear region of cytoplasm membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle membrane-enclosed lumen intracellular anatomical structure cytoplasm cellular anatomical entity cytosol perinuclear region of cytoplasm membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
G	COP9 signalosome complex subunit 7b	-	organonitrogen compound metabolic process primary metabolic process protein deneddylation organic substance metabolic process protein modification by small protein removal macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation or removal cellular component organization cellular component biogenesis organonitrogen compound metabolic process primary metabolic process protein deneddylation organic substance metabolic process protein modification by small protein removal macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation or removal cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization COP9 signalosome assembly protein-containing complex assembly cellular process cellular component organization or biogenesis regulation of biological process regulation of protein modification process regulation of post-translational protein modification regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process regulation of primary metabolic process regulation of protein neddylation regulation of protein modification by small protein conjugation or removal regulation of metabolic process protein neddylation protein modification by small protein conjugation	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
H	COP9 signalosome complex subunit 8	-	cellular response to stimulus regulation of cellular process response to stimulus positive regulation of phosphorylation regulation of catalytic activity regulation of transferase activity positive regulation of phosphate metabolic process intracellular signal transduction cell communication regulation of primary metabolic process positive regulation of metabolic process regulation of phosphate metabolic process intracellular signaling cassette phosphate-containing compound metabolic process cellular response to stimulus regulation of cellular process response to stimulus positive regulation of phosphorylation regulation of catalytic activity regulation of transferase activity positive regulation of phosphate metabolic process intracellular signal transduction cell communication regulation of primary metabolic process positive regulation of metabolic process regulation of phosphate metabolic process intracellular signaling cassette phosphate-containing compound metabolic process positive regulation of macromolecule metabolic process signal transduction phosphorus metabolic process protein modification process positive regulation of protein phosphorylation activation of NF-kappaB-inducing kinase activity regulation of biological process protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation non-canonical NF-kappaB signal transduction cellular metabolic process regulation of protein metabolic process regulation of cellular metabolic process primary metabolic process regulation of molecular function positive regulation of kinase activity regulation of kinase activity activation of protein kinase activity macromolecule modification regulation of phosphorus metabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein modification process signaling regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of biological process positive regulation of cellular metabolic process positive regulation of molecular function positive regulation of protein modification process organic substance metabolic process protein metabolic process positive regulation of protein kinase activity positive regulation of cellular process organonitrogen compound metabolic process positive regulation of transferase activity biological regulation positive regulation of catalytic activity regulation of protein kinase activity regulation of macromolecule metabolic process cellular process regulation of phosphorylation cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization COP9 signalosome assembly protein-containing complex assembly cellular component organization or biogenesis negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation negative regulation of cellular process negative regulation of biological process post-translational protein modification protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal protein deneddylation protein modification by small protein removal regulation of post-translational protein modification regulation of protein neddylation regulation of protein modification by small protein conjugation or removal	extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical entity vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol perinuclear region of cytoplasm extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical entity vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol perinuclear region of cytoplasm intracellular organelle protein-containing complex nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
I, K [auth M]	Kelch repeat and BTB domain-containing protein 2	-	organic substance metabolic process biosynthetic process cellular biosynthetic process cellular metabolic process organic substance biosynthetic process metabolic process cellular process macromolecule metabolic process gene expression macromolecule biosynthetic process cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus organic substance metabolic process biosynthetic process cellular biosynthetic process cellular metabolic process organic substance biosynthetic process metabolic process cellular process macromolecule metabolic process gene expression macromolecule biosynthetic process cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication intracellular signaling cassette signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction response to organic substance response to hormone response to chemical response to endogenous stimulus response to organonitrogen compound response to peptide hormone response to insulin response to oxygen-containing compound response to nitrogen compound primary metabolic process lipid metabolic process organonitrogen compound metabolic process protein ubiquitination macromolecule modification protein metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal monosaccharide metabolic process carbohydrate metabolic process hexose metabolic process small molecule metabolic process glucose metabolic process	-
J [auth L]	Cullin-3	ubiquitin ligase complex scaffold activity protein-macromolecule adaptor activity molecular adaptor activity protein binding binding signaling receptor binding Notch binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity ubiquitin ligase complex scaffold activity protein-macromolecule adaptor activity molecular adaptor activity protein binding binding signaling receptor binding Notch binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding POZ domain binding protein domain specific binding identical protein binding cyclin binding	cellular response to stimulus response to organic substance catabolic process response to stimulus proteolysis involved in protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process cellular response to misfolded protein response to misfolded protein organic substance metabolic process cellular response to stress modification-dependent macromolecule catabolic process proteolysis response to stress cellular response to stimulus response to organic substance catabolic process response to stimulus proteolysis involved in protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process cellular response to misfolded protein response to misfolded protein organic substance metabolic process cellular response to stress modification-dependent macromolecule catabolic process proteolysis response to stress protein metabolic process cellular response to organic substance organonitrogen compound catabolic process organonitrogen compound metabolic process cellular response to topologically incorrect protein primary metabolic process proteasomal protein catabolic process protein catabolic process nuclear protein quality control by the ubiquitin-proteasome system cellular response to chemical stimulus modification-dependent protein catabolic process response to chemical response to topologically incorrect protein ubiquitin-dependent protein catabolic process metabolic process cellular process macromolecule metabolic process protein quality control for misfolded or incompletely synthesized proteins organic substance catabolic process developmental process multicellular organism development multicellular organismal process embryonic cleavage anatomical structure development cell division embryo development gland development animal organ development liver development anatomical structure morphogenesis gland morphogenesis hepaticobiliary system development animal organ morphogenesis liver morphogenesis system development regulation of cellular process cellular biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process negative regulation of type I interferon production cytokine production organic substance biosynthetic process negative regulation of cellular process regulation of cytokine production regulation of multicellular organismal process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process type I interferon production cellular metabolic process negative regulation of metabolic process biological regulation negative regulation of cytokine production regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process negative regulation of multicellular organismal process regulation of metabolic process regulation of type I interferon production regulation of cytokinesis positive regulation of cell division regulation of cell cycle process positive regulation of biological process cytokinesis positive regulation of cell cycle regulation of cell division positive regulation of cytokinesis positive regulation of cell cycle process cell cycle regulation of cell cycle positive regulation of cellular process cell cycle process protein destabilization regulation of protein stability regulation of biological quality anaphase-promoting complex-dependent catabolic process establishment of organelle localization cellular localization mitotic metaphase chromosome alignment mitotic cell cycle metaphase chromosome alignment cellular component organization localization chromosome localization organelle localization establishment of localization in cell mitotic sister chromatid segregation cellular component organization or biogenesis chromosome segregation mitotic nuclear division organelle fission chromosome organization sister chromatid segregation establishment of localization organelle organization nuclear division mitotic cell cycle process nuclear chromosome segregation establishment of chromosome localization vesicle budding from membrane transport vesicle targeting, to, from or within Golgi vesicle-mediated transport vesicle targeting vesicle organization cellular component biogenesis cellular component assembly protein-containing complex assembly vesicle coating vesicle targeting, rough ER to cis-Golgi membrane organization vesicle localization protein-containing complex organization establishment of vesicle localization intracellular transport endoplasmic reticulum to Golgi vesicle-mediated transport COPII-coated vesicle budding COPII vesicle coating Golgi vesicle transport regulation of cell cycle phase transition cell cycle phase transition regulation of mitotic cell cycle phase transition regulation of mitotic cell cycle positive regulation of mitotic cell cycle phase transition positive regulation of cell cycle phase transition positive regulation of mitotic cell cycle mitotic cell cycle phase transition protein autoubiquitination protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal actomyosin structure organization actin cytoskeleton organization actin filament organization actin filament bundle organization contractile actin filament bundle assembly actin filament-based process actin filament bundle assembly stress fiber assembly supramolecular fiber organization cytoskeleton organization cell migration cell motility fibroblast apoptotic process apoptotic process cell death programmed cell death protein polyubiquitination cellular response to acid chemical cellular response to amino acid stimulus response to acid chemical response to amino acid protein K48-linked ubiquitination G1/S transition of mitotic cell cycle cell cycle G1/S phase transition stem cell division regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II organic cyclic compound metabolic process organic cyclic compound biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process regulation of RNA biosynthetic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process protein monoubiquitination positive regulation of organelle organization regulation of mitotic nuclear division positive regulation of mitotic nuclear division positive regulation of mitotic metaphase/anaphase transition mitotic sister chromatid separation positive regulation of nuclear division regulation of chromosome organization regulation of organelle organization regulation of chromosome separation regulation of chromosome segregation regulation of metaphase/anaphase transition of cell cycle regulation of cellular component organization regulation of mitotic sister chromatid separation positive regulation of cellular component organization regulation of mitotic metaphase/anaphase transition positive regulation of metaphase/anaphase transition of cell cycle chromosome separation regulation of sister chromatid segregation positive regulation of mitotic sister chromatid separation regulation of nuclear division metaphase/anaphase transition of mitotic cell cycle positive regulation of chromosome separation metaphase/anaphase transition of cell cycle signaling intracellular signal transduction cell communication apoptotic signaling pathway signal transduction intrinsic apoptotic signaling pathway regulation protein catabolic process at synapse regulation of catabolic process regulation protein catabolic process at postsynapse embryonic morphogenesis gastrulation integrin-mediated signaling pathway cell surface receptor signaling pathway regulation of protein modification process positive regulation of protein metabolic process regulation of protein ubiquitination positive regulation of post-translational protein modification positive regulation of metabolic process positive regulation of protein modification process positive regulation of macromolecule metabolic process regulation of protein modification by small protein conjugation or removal positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of post-translational protein modification regulation of protein metabolic process positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction positive regulation of TORC1 signaling positive regulation of response to stimulus regulation of intracellular signal transduction positive regulation of TOR signaling regulation of TORC1 signaling TOR signaling regulation of signaling regulation of TOR signaling positive regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication TORC1 signaling positive regulation of signaling cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation small GTPase-mediated signal transduction negative regulation of Rho protein signal transduction negative regulation of signaling regulation of small GTPase mediated signal transduction negative regulation of intracellular signal transduction Rho protein signal transduction negative regulation of cell communication intracellular signaling cassette negative regulation of response to stimulus negative regulation of small GTPase mediated signal transduction regulation of Rho protein signal transduction negative regulation of signal transduction trophectodermal cell differentiation cellular developmental process chordate embryonic development cell morphogenesis in utero embryonic development blastocyst formation embryo development ending in birth or egg hatching cell differentiation trophectodermal cellular morphogenesis anatomical structure formation involved in morphogenesis blastocyst development Wnt signaling pathway defense response inflammatory response cell projection organization	intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole cellular anatomical entity microtubule cytoskeleton non-membrane-bounded organelle membrane extracellular exosome membrane-bounded organelle extracellular vesicle intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole cellular anatomical entity microtubule cytoskeleton non-membrane-bounded organelle membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle polymeric cytoskeletal fiber spindle microtubule polar microtubule supramolecular fiber microtubule supramolecular polymer supramolecular complex cytoplasm cytosol cell projection cilium 9+2 motile cilium sperm flagellum motile cilium plasma membrane bounded cell projection synapse cell junction glutamatergic synapse Golgi apparatus intracellular membrane-bounded organelle endomembrane system postsynapse centrosome microtubule organizing center cell periphery plasma membrane mitotic spindle nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex Cul3-RING ubiquitin ligase complex intracellular protein-containing complex
L [auth R]	E3 ubiquitin-protein ligase RBX1	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-ubiquitin ligase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity molecular adaptor activity ubiquitin protein ligase binding protein binding binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-ubiquitin ligase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity molecular adaptor activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding cullin family protein binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding NEDD8 transferase activity NEDD8 ligase activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process multicellular organismal process regulation of cellular process cellular biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process negative regulation of type I interferon production organic substance metabolic process cytokine production cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process multicellular organismal process regulation of cellular process cellular biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process negative regulation of type I interferon production organic substance metabolic process cytokine production organic substance biosynthetic process negative regulation of cellular process regulation of cytokine production regulation of multicellular organismal process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process type I interferon production cellular metabolic process negative regulation of metabolic process biological regulation negative regulation of cytokine production regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process negative regulation of multicellular organismal process regulation of metabolic process regulation of type I interferon production developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation signaling negative regulation of signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway regulation of signal transduction negative regulation of cell communication cell communication negative regulation of Wnt signaling pathway signal transduction Wnt signaling pathway regulation of signaling cell surface receptor signaling pathway regulation of Wnt signaling pathway negative regulation of response to stimulus negative regulation of signal transduction negative regulation of canonical Wnt signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of proteasomal protein catabolic process catabolic process positive regulation of protein metabolic process proteolysis involved in protein catabolic process positive regulation of biological process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of ubiquitin-dependent protein catabolic process regulation of proteolysis regulation of proteolysis involved in protein catabolic process modification-dependent macromolecule catabolic process proteolysis positive regulation of macromolecule metabolic process protein metabolic process organonitrogen compound catabolic process organonitrogen compound metabolic process regulation of protein metabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of proteolysis involved in protein catabolic process positive regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process positive regulation of proteolysis regulation of proteasomal protein catabolic process positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process organic substance catabolic process regulation of protein catabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal response to oxidative stress regulation of response to stress regulation of response to oxidative stress negative regulation of response to oxidative stress intracellular signal transduction intracellular signaling cassette MAPK cascade protein polyubiquitination ubiquitin-dependent protein catabolic process via the C-end degron rule pathway cellular response to acid chemical cellular response to amino acid stimulus response to acid chemical response to organic substance cellular response to chemical stimulus response to chemical response to amino acid DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process DNA repair protein K48-linked ubiquitination protein monoubiquitination positive regulation of cell communication positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction positive regulation of cellular process positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction positive regulation of signaling protein neddylation SCF-dependent proteasomal ubiquitin-dependent protein catabolic process regulation of protein modification process regulation of protein autoubiquitination regulation of protein ubiquitination positive regulation of post-translational protein modification positive regulation of protein modification process regulation of protein modification by small protein conjugation or removal positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of post-translational protein modification protein autoubiquitination positive regulation of protein autoubiquitination positive regulation of TORC1 signaling positive regulation of TOR signaling regulation of TORC1 signaling TOR signaling regulation of TOR signaling TORC1 signaling T cell activation immune system process cell activation lymphocyte activation leukocyte activation response to light stimulus cellular response to radiation response to UV cellular response to environmental stimulus cellular response to light stimulus response to radiation response to abiotic stimulus cellular response to abiotic stimulus cellular response to UV cellular response to chemical stress	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex Cul5-RING ubiquitin ligase complex Cul4-RING E3 ubiquitin ligase complex Cul4A-RING E3 ubiquitin ligase complex membrane-bounded organelle intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex Cul5-RING ubiquitin ligase complex Cul4-RING E3 ubiquitin ligase complex Cul4A-RING E3 ubiquitin ligase complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen SCF ubiquitin ligase complex Cul7-RING ubiquitin ligase complex Cul3-RING ubiquitin ligase complex Cul4B-RING E3 ubiquitin ligase complex Cul2-RING ubiquitin ligase complex
E [auth D]	COP9 signalosome complex subunit 4	ubiquitin-like protein peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity deNEDDylase activity	organonitrogen compound metabolic process primary metabolic process organic substance metabolic process macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal protein deneddylation protein modification by small protein removal organonitrogen compound metabolic process primary metabolic process organic substance metabolic process macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal protein deneddylation protein modification by small protein removal regulation of biological process regulation of protein modification process regulation of post-translational protein modification regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process regulation of primary metabolic process regulation of protein neddylation regulation of protein modification by small protein conjugation or removal regulation of metabolic process	cell junction cellular anatomical entity membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck nuclear body intracellular organelle nucleoplasm organelle lumen organelle cell junction cellular anatomical entity membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck nuclear body intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cytoplasm cytosol protein-containing complex nuclear protein-containing complex COP9 signalosome transport vesicle synapse intracellular vesicle endomembrane system presynapse cytoplasmic vesicle synaptic vesicle secretory vesicle vesicle exocytic vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E]	IPR040961	Cop9 signalosome subunit 5 C-terminal domain	Domain
A [auth E]	IPR037518	MPN domain	Domain
A [auth E]	IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	Domain
B [auth A]	IPR048624	COP9 signalosome complex subunit 1, C-terminal helix	Domain
B [auth A]	IPR019585	26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1	Family
B [auth A]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
B [auth A]	IPR000717	Proteasome component (PCI) domain	Domain
B [auth A]	IPR045135	26S proteasome regulatory subunit Rpn7, N-terminal	Domain
C [auth B]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
C [auth B]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
C [auth B]	IPR000717	Proteasome component (PCI) domain	Domain
D [auth C]	IPR048621	COP9 signalosome complex subunit 3, C-terminal helix	Domain
D [auth C]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
D [auth C]	IPR000717	Proteasome component (PCI) domain	Domain
F	IPR024969	EIF3F/CSN6-like, C-terminal	Domain
F	IPR037518	MPN domain	Domain
F	IPR033859	COP9 signalosome subunit 6	Family
F	IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	Domain
G	IPR045237	Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7	Family
G	IPR041481	COP9 signalosome complex subunit 7, helix I	Domain
G	IPR000717	Proteasome component (PCI) domain	Domain
H	IPR033205	COP9 signalosome, subunit CSN8	Family
H	IPR033464	CSN8/PSMD8/EIF3K	Domain
H	IPR000717	Proteasome component (PCI) domain	Domain
I, K [auth M]	IPR017096	BTB-kelch protein	Family
I, K [auth M]	IPR000210	BTB/POZ domain	Domain
I, K [auth M]	IPR047074	Kelch repeat and BTB domain-containing protein 2, BACK domain	Domain
I, K [auth M]	IPR015915	Kelch-type beta propeller	Homologous Superfamily
I, K [auth M]	IPR030586	Kelch repeat and BTB domain-containing protein 2, BTB/POZ domain	Domain
I, K [auth M]	IPR006652	Kelch repeat type 1	Repeat
I, K [auth M]	IPR011705	BTB/Kelch-associated	Domain
I, K [auth M]	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
J [auth L]	IPR045093	Cullin	Family
J [auth L]	IPR019559	Cullin protein, neddylation domain	Domain
J [auth L]	IPR016158	Cullin homology domain	Domain
J [auth L]	IPR001373	Cullin, N-terminal	Domain
J [auth L]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
J [auth L]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
J [auth L]	IPR016157	Cullin, conserved site	Conserved Site
J [auth L]	IPR036317	Cullin homology domain superfamily	Homologous Superfamily
J [auth L]	IPR016159	Cullin repeat-like-containing domain superfamily	Homologous Superfamily
L [auth R]	IPR024766	Zinc finger, RING-H2-type	Domain
L [auth R]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
L [auth R]	IPR001841	Zinc finger, RING-type	Domain
E [auth D]	IPR041406	COP9 signalosome complex subunit 4, helix turn helix domain	Domain
E [auth D]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
E [auth D]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
E [auth D]	IPR000717	Proteasome component (PCI) domain	Domain
E [auth D]	IPR040134	26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth E]	Pharos: Q92905	Stevens-Johnson syndrome brain aneurysm Liver carcinoma medulloblastoma plasma cell myeloma lymphoplasmacytic lymphoma psoriasis toxic epidermal necrolysis hepatocellular carcinoma Machado-Joseph disease ovarian cancer
B [auth A]	Pharos: Q13098	attention deficit hyperactivity disorder, inattentive type malignant mesothelioma schizophrenia
C [auth B]	Pharos: P61201	endometriosis Endometrioma lung adenocarcinoma plasma cell myeloma lymphoplasmacytic lymphoma tuberculosis hereditary spastic paraplegia ovarian cancer
D [auth C]	Pharos: Q9UNS2	Hepatomegaly plasma cell myeloma osteosarcoma ovarian cancer
F	Pharos: Q7L5N1	HIV infectious disease chronic obstructive pulmonary disease idiopathic pulmonary fibrosis HIV Coinfection ovarian cancer plasma cell myeloma
G	Pharos: Q9H9Q2	osteosarcoma
H	Pharos: Q99627	Alzheimer disease glioblastoma lung cancer malignant mesothelioma myopathy ovarian cancer primitive neuroectodermal tumor astrocytic tumor heart disease malignant ependymoma malignant pancreatic neoplasm oligodendroglioma Pick disease atypical teratoid rhabdoid tumor large cell medulloblastoma Alzheimer disease glioblastoma lung cancer malignant mesothelioma myopathy ovarian cancer primitive neuroectodermal tumor astrocytic tumor heart disease malignant ependymoma malignant pancreatic neoplasm oligodendroglioma Pick disease atypical teratoid rhabdoid tumor large cell medulloblastoma malignant glioma medulloblastoma osteosarcoma pilocytic astrocytoma
I, K [auth M]	Pharos: Q8IY47	primitive neuroectodermal tumor adenoma endogenous depression gastric carcinoma large cell medulloblastoma malignant mesothelioma oligodendroglioma pancreatic ductal adenocarcinoma tuberculosis atypical teratoid rhabdoid tumor exocrine pancreatic carcinoma glioblastoma malignant ependymoma malignant pancreatic neoplasm osteosarcoma primitive neuroectodermal tumor adenoma endogenous depression gastric carcinoma large cell medulloblastoma malignant mesothelioma oligodendroglioma pancreatic ductal adenocarcinoma tuberculosis atypical teratoid rhabdoid tumor exocrine pancreatic carcinoma glioblastoma malignant ependymoma malignant pancreatic neoplasm osteosarcoma plasma cell myeloma diabetes mellitus gastric cancer hepatocellular carcinoma malignant glioma medulloblastoma ovarian cancer
J [auth L]	Pharos: Q13618	pseudohypoaldosteronism type 2E melanoma prostate cancer Neurodevelopmental Disorders pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma tuberculosis anorexia nervosa atypical teratoid rhabdoid tumor cutaneous melanoma intellectual disability malignant ependymoma medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm pseudohypoaldosteronism type 2E melanoma prostate cancer Neurodevelopmental Disorders pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma tuberculosis anorexia nervosa atypical teratoid rhabdoid tumor cutaneous melanoma intellectual disability malignant ependymoma medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm plasma cell myeloma spina bifida astrocytic tumor autism spectrum disorder epilepsy large cell medulloblastoma malignant glioma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor pseudohypoaldosteronism type 2A subependymal giant cell astrocytoma attention deficit hyperactivity disorder, inattentive type breast cancer glioblastoma lung cancer malignant mesothelioma
L [auth R]	Pharos: P62877	Stevens-Johnson syndrome acute myeloid leukemia Drug-Induced Stevens Johnson Syndrome ovarian cancer toxic epidermal necrolysis astrocytic tumor endogenous depression Crohn disease
E [auth D]	Pharos: Q9BT78	diabetes mellitus malignant colon neoplasm lung carcinoma ovarian cancer lymphoplasmacytic lymphoma plasma cell myeloma