8H36
Cryo-EM Structure of the KBTBD2-CUL3-Rbx1-p85a dimeric complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth E] | SCOP2B Superfamily | RING/U-box like | 8040866 | 3000160 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | RING/U-box like | 8040866 | 3000160 | SCOP2B (2022-06-29) |
C [auth G] | SCOP2B Superfamily | SH2 domain | 8033066 | 3000197 | SCOP2B (2022-06-29) |
C [auth G] | SCOP2B Superfamily | SH2 domain | 8052378 | 3000197 | SCOP2B (2022-06-29) |
C [auth G] | SCOP2B Superfamily | PI3K inter-SH2 coiled-coil domain | 8061497 | 3002111 | SCOP2B (2022-06-29) |
F [auth H] | SCOP2B Superfamily | SH2 domain | 8052378 | 3000197 | SCOP2B (2022-06-29) |
F [auth H] | SCOP2B Superfamily | SH2 domain | 8033066 | 3000197 | SCOP2B (2022-06-29) |
F [auth H] | SCOP2B Superfamily | PI3K inter-SH2 coiled-coil domain | 8061497 | 3002111 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Cullin repeat-like | 8084778 | 3000059 | SCOP2B (2022-06-29) |
G [auth F] | SCOP2B Superfamily | Cullin repeat-like | 8084778 | 3000059 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | PF12678 | e8h36E1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF12678 | ECOD (1.6) |
H [auth D] | PF12678 | e8h36D1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF12678 | ECOD (1.6) |
C [auth G] | PF16454 | e8h36G1 | A: alpha bundles | X: YscO-like | H: Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain (From Topology) | T: Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | F: PF16454 | ECOD (1.6) |
C [auth G] | PF00017 | e8h36G3 | A: a+b two layers | X: SH2 (From Topology) | H: SH2 (From Topology) | T: SH2 | F: PF00017 | ECOD (1.6) |
F [auth H] | PF16454 | e8h36H1 | A: alpha bundles | X: YscO-like | H: Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain (From Topology) | T: Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | F: PF16454 | ECOD (1.6) |
F [auth H] | PF00017 | e8h36H3 | A: a+b two layers | X: SH2 (From Topology) | H: SH2 (From Topology) | T: SH2 | F: PF00017 | ECOD (1.6) |
D [auth C] | PF00888 | e8h36C1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF00888 | ECOD (1.6) |
D [auth C] | PF10557 | e8h36C2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF10557 | ECOD (1.6) |
D [auth C] | PF00888 | e8h36C3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00888 | ECOD (1.6) |
D [auth C] | PF00888 | e8h36C4 | A: a+b duplicates or obligate multimers | X: a+b domain in cullin-like proteins (From Topology) | H: a+b domain in cullin-like proteins (From Topology) | T: a+b domain in cullin-like proteins | F: PF00888 | ECOD (1.6) |
G [auth F] | PF00888 | e8h36F4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF00888 | ECOD (1.6) |
G [auth F] | PF10557 | e8h36F1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF10557 | ECOD (1.6) |
G [auth F] | PF00888 | e8h36F5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00888 | ECOD (1.6) |
G [auth F] | PF00888 | e8h36F3 | A: a+b duplicates or obligate multimers | X: a+b domain in cullin-like proteins (From Topology) | H: a+b domain in cullin-like proteins (From Topology) | T: a+b domain in cullin-like proteins | F: PF00888 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A], E [auth B] | PF07707 | BTB And C-terminal Kelch (BACK) | BTB And C-terminal Kelch | This domain is found associated with Pfam:PF00651 and Pfam:PF01344 [1]. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues [1]. This family appears to be closely related to the BTB domain (Finn RD ... | Domain |
B [auth A], E [auth B] | PF00651 | BTB/POZ domain (BTB) | BTB/POZ domain | The BTB (for BR-C, ttk and bab) [1] or POZ (for Pox virus and Zinc finger) [2] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family o ... | Domain |
B [auth A], E [auth B] | PF01344 | Kelch motif (Kelch_1) | Kelch motif | - | Repeat |
A [auth E], H [auth D] | PF12678 | RING-H2 zinc finger domain (zf-rbx1) | RING-H2 zinc finger domain | There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell ... | Domain |
C [auth G], F [auth H] | PF00017 | SH2 domain (SH2) | SH2 domain | - | Domain |
C [auth G], F [auth H] | PF16454 | Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain (PI3K_P85_iSH2) | Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain | This domain is found between the two SH2 domains in phosphatidylinositol 3-kinase regulatory subunit P85. It forms a complex with the adaptor-binding domain of phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha [1]. | Domain |
D [auth C], G [auth F] | PF00888 | Cullin family (Cullin) | Cullin family | - | Repeat |
D [auth C], G [auth F] | PF10557 | Cullin protein neddylation domain (Cullin_Nedd8) | Cullin protein neddylation domain | This is the neddylation site of cullin proteins which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cu ... | Domain |